Polymeric structures and dynamic properties of the bacterial actin AlfA

J Mol Biol. 2010 Apr 9;397(4):1031-41. doi: 10.1016/j.jmb.2010.02.010. Epub 2010 Feb 12.

Abstract

AlfA is a recently discovered DNA segregation protein from Bacillus subtilis that is distantly related to actin and the bacterial actin homologues ParM and MreB. Here we show that AlfA mostly forms helical 7/3 filaments, with a repeat of about 180 A, that are arranged in three-dimensional bundles. Other polymorphic structures in the form of two-dimensional rafts or paracrystalline nets were also observed. Here AlfA adopted a 16/7 helical symmetry, with a repeat of about 387 A. Thin polymers consisting of several intertwining filaments also formed. Observed helical symmetries of AlfA filaments differed from those of other members of the actin family: F-actin, ParM, or MreB. Both ATP and guanosine 5'-triphosphate are able to promote rapid AlfA filament formation with almost equal efficiencies. The helical structure is only preserved under physiological salt concentrations and at a pH between 6.4 and 7.4, the physiological range of the cytoplasm of B. subtilis. Polymerization kinetics are extremely rapid and compatible with a cooperative assembly mechanism requiring only two steps: monomer activation followed by elongation, making AlfA one of the most efficient polymerizing motors within the actin family. Phosphate release lags behind polymerization, and time-lapse total internal reflection fluorescence images of AlfA bundles are consistent with treadmilling rather than dynamic microtubule-like instability. High-pressure small angle X-ray scattering experiments reveal that the stability of AlfA filaments is intermediate between the stability of ParM and the stability of F-actin. These results emphasize that actin-like polymerizing machineries have diverged to produce a variety of filament geometries with diverse properties that are tailored for specific biological processes.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Actin Cytoskeleton / metabolism*
  • Actins / chemistry
  • Actins / metabolism*
  • Actins / ultrastructure*
  • Adenosine Triphosphate / metabolism
  • Bacillus subtilis / metabolism*
  • Bacterial Proteins / chemistry
  • Bacterial Proteins / metabolism*
  • Bacterial Proteins / ultrastructure*
  • Fourier Analysis
  • Guanosine Triphosphate / metabolism
  • Hydrogen-Ion Concentration
  • Microscopy, Electron, Transmission
  • Models, Molecular
  • Protein Multimerization*
  • Protein Stability
  • Scattering, Small Angle
  • Sodium Chloride

Substances

  • Actins
  • Bacterial Proteins
  • Sodium Chloride
  • Guanosine Triphosphate
  • Adenosine Triphosphate