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TagGraph reveals vast protein modification landscapes from large tandem mass spectrometry datasets.
Nat Biotechnol. 2019 Apr;37(4):469-479. doi: 10.1038/s41587-019-0067-5. Epub 2019 Apr 1.
Nat Biotechnol. 2019.
PMID: 30936560
Free PMC article.
SAFA: semi-automated footprinting analysis software for high-throughput quantification of nucleic acid footprinting experiments.
Das R, Laederach A, Pearlman SM, Herschlag D, Altman RB.
Das R, et al. Among authors: pearlman sm.
RNA. 2005 Mar;11(3):344-54. doi: 10.1261/rna.7214405.
RNA. 2005.
PMID: 15701734
Free PMC article.
Item in Clipboard
Coarse-grained modeling of large RNA molecules with knowledge-based potentials and structural filters.
Jonikas MA, Radmer RJ, Laederach A, Das R, Pearlman S, Herschlag D, Altman RB.
Jonikas MA, et al.
RNA. 2009 Feb;15(2):189-99. doi: 10.1261/rna.1270809.
RNA. 2009.
PMID: 19144906
Free PMC article.
Item in Clipboard
Semiautomated and rapid quantification of nucleic acid footprinting and structure mapping experiments.
Laederach A, Das R, Vicens Q, Pearlman SM, Brenowitz M, Herschlag D, Altman RB.
Laederach A, et al. Among authors: pearlman sm.
Nat Protoc. 2008;3(9):1395-401. doi: 10.1038/nprot.2008.134.
Nat Protoc. 2008.
PMID: 18772866
Free PMC article.
Item in Clipboard
A mechanism for the evolution of phosphorylation sites.
Pearlman SM, Serber Z, Ferrell JE Jr.
Pearlman SM, et al.
Cell. 2011 Nov 11;147(4):934-46. doi: 10.1016/j.cell.2011.08.052.
Cell. 2011.
PMID: 22078888
Free PMC article.
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