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Mashtree: a rapid comparison of whole genome sequence files.
Katz LS, Griswold T, Morrison SS, Caravas JA, Zhang S, den Bakker HC, Deng X, Carleton HA. Katz LS, et al. Among authors: den bakker hc. J Open Source Softw. 2019 Dec 10;4(44):10.21105/joss.01762. doi: 10.21105/joss.01762. J Open Source Softw. 2019. PMID: 35978566 Free PMC article. No abstract available.
Salmonella enterica and Escherichia coli in Wheat Flour: Detection and Serotyping by a Quasimetagenomic Approach Assisted by Magnetic Capture, Multiple-Displacement Amplification, and Real-Time Sequencing.
Forghani F, Li S, Zhang S, Mann DA, Deng X, den Bakker HC, Diez-Gonzalez F. Forghani F, et al. Among authors: den bakker hc. Appl Environ Microbiol. 2020 Jun 17;86(13):e00097-20. doi: 10.1128/AEM.00097-20. Print 2020 Jun 17. Appl Environ Microbiol. 2020. PMID: 32358002 Free PMC article.
Determination of Evolutionary Relationships of Outbreak-Associated Listeria monocytogenes Strains of Serotypes 1/2a and 1/2b by Whole-Genome Sequencing.
Bergholz TM, den Bakker HC, Katz LS, Silk BJ, Jackson KA, Kucerova Z, Joseph LA, Turnsek M, Gladney LM, Halpin JL, Xavier K, Gossack J, Ward TJ, Frace M, Tarr CL. Bergholz TM, et al. Among authors: den bakker hc. Appl Environ Microbiol. 2015 Nov 20;82(3):928-38. doi: 10.1128/AEM.02440-15. Print 2016 Feb 1. Appl Environ Microbiol. 2015. PMID: 26590286 Free PMC article.
Complete Genome Sequences of Four Salmonella enterica Strains (Including Those of Serotypes Montevideo, Mbandaka, and Lubbock) Isolated from Peripheral Lymph Nodes of Healthy Cattle.
Bugarel M, Cook PW, den Bakker HC, Harhay D, Nightingale KK, Loneragan GH. Bugarel M, et al. Among authors: den bakker hc. Microbiol Resour Announc. 2019 Jan 10;8(2):e01450-18. doi: 10.1128/MRA.01450-18. eCollection 2019 Jan. Microbiol Resour Announc. 2019. PMID: 30643887 Free PMC article.
75 results