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Next-generation IEDB tools: a platform for epitope prediction and analysis.
Yan Z, Kim K, Kim H, Ha B, Gambiez A, Bennett J, de Almeida Mendes MF, Trevizani R, Mahita J, Richardson E, Marrama D, Blazeska N, Koşaloğlu-Yalçın Z, Nielsen M, Sette A, Peters B, Greenbaum JA. Yan Z, et al. Among authors: kosaloglu yalcin z. Nucleic Acids Res. 2024 May 23:gkae407. doi: 10.1093/nar/gkae407. Online ahead of print. Nucleic Acids Res. 2024. PMID: 38783079
Autoimmunity Against Surfactant Protein B Is Associated with Pneumonitis During Checkpoint Blockade.
Wyss N, Berner F, Walter V, Jochum AK, Purde MT, Abdou MT, Sinnberg T, Hofmeister K, Pop OT, Hasan Ali O, Bauer J, Cheng HW, Lütge M, Klümper N, Diem S, Kosaloglu-Yalcin Z, Zhang Y, Sellmer L, Macek B, Karbach J, König D, Läubli H, Zender L, Meyer BS, Driessen C, Schürch CM, Jochum W, Amaral T, Heinzerling L, Cozzio A, Hegazy AN, Schneider T, Brutsche MH, Sette A, Lenz TL, Walz J, Rammensee HG, Früh M, Jäger E, Becher B, Tufman A, Nuñez N, Joerger M, Flatz L. Wyss N, et al. Among authors: kosaloglu yalcin z. Am J Respir Crit Care Med. 2024 Apr 16. doi: 10.1164/rccm.202311-2136OC. Online ahead of print. Am J Respir Crit Care Med. 2024. PMID: 38626354
A functional identification platform reveals frequent, spontaneous neoantigen-specific T cell responses in patients with cancer.
Miller AM, Koşaloğlu-Yalçın Z, Westernberg L, Montero L, Bahmanof M, Frentzen A, Lanka M, Logandha Ramamoorthy Premlal A, Seumois G, Greenbaum J, Brightman SE, Soria Zavala K, Thota RR, Naradikian MS, Makani SS, Lippman SM, Sette A, Cohen EEW, Peters B, Schoenberger SP. Miller AM, et al. Among authors: kosaloglu yalcin z. Sci Transl Med. 2024 Feb 28;16(736):eabj9905. doi: 10.1126/scitranslmed.abj9905. Epub 2024 Feb 28. Sci Transl Med. 2024. PMID: 38416845
Estimating tissue-specific peptide abundance from public RNA-Seq data.
Frentzen A, Greenbaum JA, Kim H, Peters B, Koşaloğlu-Yalçın Z. Frentzen A, et al. Among authors: kosaloglu yalcin z. Front Genet. 2023 Jan 12;14:1082168. doi: 10.3389/fgene.2023.1082168. eCollection 2023. Front Genet. 2023. PMID: 36713080 Free PMC article.
The Cancer Epitope Database and Analysis Resource (CEDAR).
Koşaloğlu-Yalçın Z, Blazeska N, Vita R, Carter H, Nielsen M, Schoenberger S, Sette A, Peters B. Koşaloğlu-Yalçın Z, et al. Nucleic Acids Res. 2023 Jan 6;51(D1):D845-D852. doi: 10.1093/nar/gkac902. Nucleic Acids Res. 2023. PMID: 36250634 Free PMC article.
21 results