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Chromatin immunoprecipitation and microarray-based analysis of protein location.
Nat Protoc. 2006;1(2):729-48. doi: 10.1038/nprot.2006.98.
Nat Protoc. 2006.
PMID: 17406303
Free PMC article.
Global and gene-specific analyses show distinct roles for Myod and Myog at a common set of promoters.
Cao Y, Kumar RM, Penn BH, Berkes CA, Kooperberg C, Boyer LA, Young RA, Tapscott SJ.
Cao Y, et al.
EMBO J. 2006 Feb 8;25(3):502-11. doi: 10.1038/sj.emboj.7600958. Epub 2006 Jan 26.
EMBO J. 2006.
PMID: 16437161
Free PMC article.
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Evidence for an instructive mechanism of de novo methylation in cancer cells.
Keshet I, Schlesinger Y, Farkash S, Rand E, Hecht M, Segal E, Pikarski E, Young RA, Niveleau A, Cedar H, Simon I.
Keshet I, et al.
Nat Genet. 2006 Feb;38(2):149-53. doi: 10.1038/ng1719.
Nat Genet. 2006.
PMID: 16444255
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Core transcriptional regulatory circuitry in human hepatocytes.
Odom DT, Dowell RD, Jacobsen ES, Nekludova L, Rolfe PA, Danford TW, Gifford DK, Fraenkel E, Bell GI, Young RA.
Odom DT, et al.
Mol Syst Biol. 2006;2:2006.0017. doi: 10.1038/msb4100059. Epub 2006 May 2.
Mol Syst Biol. 2006.
PMID: 16738562
Free PMC article.
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Polycomb complexes repress developmental regulators in murine embryonic stem cells.
Boyer LA, Plath K, Zeitlinger J, Brambrink T, Medeiros LA, Lee TI, Levine SS, Wernig M, Tajonar A, Ray MK, Bell GW, Otte AP, Vidal M, Gifford DK, Young RA, Jaenisch R.
Boyer LA, et al.
Nature. 2006 May 18;441(7091):349-53. doi: 10.1038/nature04733. Epub 2006 Apr 19.
Nature. 2006.
PMID: 16625203
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NOTCH1 directly regulates c-MYC and activates a feed-forward-loop transcriptional network promoting leukemic cell growth.
Palomero T, Lim WK, Odom DT, Sulis ML, Real PJ, Margolin A, Barnes KC, O'Neil J, Neuberg D, Weng AP, Aster JC, Sigaux F, Soulier J, Look AT, Young RA, Califano A, Ferrando AA.
Palomero T, et al.
Proc Natl Acad Sci U S A. 2006 Nov 28;103(48):18261-6. doi: 10.1073/pnas.0606108103. Epub 2006 Nov 17.
Proc Natl Acad Sci U S A. 2006.
PMID: 17114293
Free PMC article.
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Control of developmental regulators by Polycomb in human embryonic stem cells.
Lee TI, Jenner RG, Boyer LA, Guenther MG, Levine SS, Kumar RM, Chevalier B, Johnstone SE, Cole MF, Isono K, Koseki H, Fuchikami T, Abe K, Murray HL, Zucker JP, Yuan B, Bell GW, Herbolsheimer E, Hannett NM, Sun K, Odom DT, Otte AP, Volkert TL, Bartel DP, Melton DA, Gifford DK, Jaenisch R, Young RA.
Lee TI, et al.
Cell. 2006 Apr 21;125(2):301-13. doi: 10.1016/j.cell.2006.02.043.
Cell. 2006.
PMID: 16630818
Free PMC article.
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Zebrafish promoter microarrays identify actively transcribed embryonic genes.
Wardle FC, Odom DT, Bell GW, Yuan B, Danford TW, Wiellette EL, Herbolsheimer E, Sive HL, Young RA, Smith JC.
Wardle FC, et al.
Genome Biol. 2006;7(8):R71. doi: 10.1186/gb-2006-7-8-R71. Epub 2006 Aug 4.
Genome Biol. 2006.
PMID: 16889661
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