Progress in multidimensional NMR investigations of peptide and protein 3-D structures in solution. From structure to functional aspects

Biochimie. 1992 Sep-Oct;74(9-10):825-36. doi: 10.1016/0300-9084(92)90065-m.

Abstract

2-D and 3-D NMR techniques were used to investigate the conformations in solution of several peptides and proteins for which crystalline structures are not available yet. Insect defensin A is a small (40 aa) antibiotic protein exhibiting a characteristic 'loop-helix-beta-sheet' structure. A striking analogy was found with charybdotoxin, a scorpion toxin in which a CSH (cysteine stabilized alpha-helix) motif is also present. Wheat phospholipid transfer protein (PLTP) (90 aa) has a 3-D structure resulting from the packing of four helices and of a C-terminal less well-defined fragment. Preliminary results show that PLTP forms a complex with lyso-PC and that such an interaction results in a conformational change affecting principally the C-terminal half of the protein. A last example is given with surfactin, a lipopeptide biosurfactant from bacterial origin. Its protonated form shows a very compact structure in which the two acidic residues located on the top of a 'horse saddle' topology face each other, whereas the ionized form could adopt a more extended conformation. A common property of these compounds is their capacity to interact with lipids. The present structural data open the way for a further establishment of structure-activity relationships.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Anti-Infective Agents / chemistry
  • Bacterial Proteins / chemistry
  • Carrier Proteins / chemistry
  • Defensins*
  • Insect Hormones / chemistry*
  • Lipopeptides
  • Magnetic Resonance Spectroscopy*
  • Membrane Proteins / chemistry
  • Molecular Sequence Data
  • Peptides / chemistry*
  • Peptides, Cyclic*
  • Phospholipid Transfer Proteins*
  • Plant Proteins / chemistry
  • Protein Conformation
  • Proteins / chemistry*
  • Solutions
  • Structure-Activity Relationship
  • Surface-Active Agents / chemistry

Substances

  • Anti-Infective Agents
  • Bacterial Proteins
  • Carrier Proteins
  • Defensins
  • Insect Hormones
  • Lipopeptides
  • Membrane Proteins
  • Peptides
  • Peptides, Cyclic
  • Phospholipid Transfer Proteins
  • Plant Proteins
  • Proteins
  • Solutions
  • Surface-Active Agents
  • insect defensin A
  • surfactin peptide