Protein side-chain dynamics observed by solution- and solid-state NMR: comparative analysis of methyl 2H relaxation data

J Am Chem Soc. 2006 Sep 27;128(38):12354-5. doi: 10.1021/ja062808a.

Abstract

Rapid advances in solid-state MAS NMR made it possible to probe protein dynamics on a per-residue basis, similar to solution experiments. In this work we compare methyl 2H relaxation rates measured in the solid and liquid samples of alpha-spectrin SH3 domain. The solution data are treated using a model-free approach to separate the contributions from the overall molecular tumbling and fast internal motion. The latter part forms the basis for comparison with the solid-state data. Although the accuracy of solid-state measurements is limited by deuterium spin diffusion, the results suggest a significant similarity between methyl dynamics in the two samples. This is a potentially important observation, preparing the ground for combined analysis of the dynamics data by solid- and solution-state NMR.

MeSH terms

  • Animals
  • Chickens
  • Escherichia coli / genetics
  • Escherichia coli / metabolism
  • Nuclear Magnetic Resonance, Biomolecular / methods*
  • Recombinant Proteins / biosynthesis
  • Recombinant Proteins / chemistry
  • Recombinant Proteins / genetics
  • Solutions
  • Spectrin / biosynthesis
  • Spectrin / chemistry*
  • Spectrin / genetics

Substances

  • Recombinant Proteins
  • Solutions
  • Spectrin