Cellular genomic maps help dissect pathology in human skin disease

J Invest Dermatol. 2008 Mar;128(3):606-15. doi: 10.1038/sj.jid.5701067. Epub 2007 Oct 11.

Abstract

Genomic signature maps of different cell types can aid in the interpretation of genomic data of specimens collected during disease states. We have defined "lineage-specific" genes, as well as "activation" genes, for cellular components of the skin: keratinocytes, fibroblasts, macrophages, monocytes, T cells, immature, and mature dendritic cells (DCs). Re-analysis of a previously published gene set of psoriasis then provided a model for assessing the usefulness of these maps. We were able to ascribe over 90% of these genes to specific cell types, and there was a surprisingly large contribution from DCs. This shows the utility of such cellular gene maps.

Publication types

  • Research Support, N.I.H., Extramural

MeSH terms

  • Biopsy
  • Cell Lineage / physiology
  • Chromosome Mapping*
  • Dendritic Cells / pathology
  • Dendritic Cells / physiology
  • Fibroblasts / pathology
  • Fibroblasts / physiology
  • Genomics*
  • Humans
  • Keratinocytes / pathology
  • Keratinocytes / physiology
  • Macrophages / pathology
  • Macrophages / physiology
  • Monocytes / pathology
  • Monocytes / physiology
  • Oligonucleotide Array Sequence Analysis
  • Skin / immunology
  • Skin / pathology*
  • Skin Diseases / genetics*
  • Skin Diseases / immunology
  • Skin Diseases / pathology*
  • T-Lymphocytes / pathology
  • T-Lymphocytes / physiology