Structure-function relationship of hammerhead ribozymes as probed by 2'-modifications

Nucleic Acids Symp Ser. 1991:(24):51-3.

Abstract

Hammerhead ribozymes containing 2'-fluoro- or 2'-aminonucleotides were prepared by automated chemical synthesis. Incorporation of 2'-fluorouridines, 2'-fluorocytidines or 2'-aminouridines did not appreciably decrease catalytic activity. The presence of 2'-aminocytidines, however, reduced the activity about 20-fold. No catalytic activity could be measured for ribozymes in which all adenosines were replaced by the 2'-fluoro analogue in presence of MgCl2. No single position could be found responsible for this loss of activity. In an attempt to construct ribozymes to hydrolyse HIV-RNA in the 5'-LTR region several constructs were tested on synthetic substrate as well as on run-off transcripts of about 1000 nucleotides length.

MeSH terms

  • Antiviral Agents / chemical synthesis
  • Antiviral Agents / pharmacology
  • Base Sequence
  • HIV / drug effects
  • HIV Long Terminal Repeat
  • Molecular Sequence Data
  • Nucleic Acid Conformation
  • Oligoribonucleotides / chemical synthesis*
  • Oligoribonucleotides / pharmacology
  • RNA, Catalytic / chemical synthesis*
  • RNA, Catalytic / chemistry
  • RNA, Catalytic / metabolism
  • RNA, Viral / drug effects
  • Ribonucleotides

Substances

  • Antiviral Agents
  • Oligoribonucleotides
  • RNA, Catalytic
  • RNA, Viral
  • Ribonucleotides