Identification of HN-methyl NOEs in large proteins using simultaneous amide-methyl TROSY-based detection

J Biomol NMR. 2009 Jan;43(1):21-30. doi: 10.1007/s10858-008-9285-8. Epub 2008 Nov 11.

Abstract

A pair of HN-methyl NOESY experiments that are based on simultaneous TROSY-type detection of amide and methyl groups is described. The preservation of cross-peak symmetry in the simultaneous (1)H-(15)N/(13)CH(3) NOE spectra enables straightforward assignments of HN-methyl NOE cross-peaks in large and complex protein structures. The pulse schemes are designed to preserve the slowly decaying components of both (1)H-(15)N and methyl (13)CH(3) spin-systems in the course of indirect evolution (t (2)) and acquisition period (t (3)) of 3D NOESY experiments. The methodology has been tested on {U-[(15)N,(2)H]; Iledelta1-[(13)CH(3)]; Leu,Val-[(13)CH(3),(12)CD(3)]}-labeled 82-kDa enzyme Malate Synthase G (MSG). A straightforward procedure that utilizes the symmetry of NOE cross-peaks in the time-shared 3D NOE data sets allows unambiguous assignments of more than 300 HN-methyl interactions in MSG from a single 3D data set providing important structural restraints for derivation of the backbone global fold.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Algorithms
  • Amides / chemistry
  • Carbon Isotopes / chemistry
  • Malate Synthase / chemistry
  • Nitrogen Isotopes / chemistry
  • Nuclear Magnetic Resonance, Biomolecular / methods*
  • Proteins / chemistry*

Substances

  • Amides
  • Carbon Isotopes
  • Nitrogen Isotopes
  • Proteins
  • Malate Synthase