Broad-range bacterial polymerase chain reaction in the microbiologic diagnosis of complicated pneumonia

J Hosp Med. 2012 Jan;7(1):8-13. doi: 10.1002/jhm.911. Epub 2011 Oct 12.

Abstract

Background: A bacterial cause is not frequently identified in children with pneumonia complicated by parapneumonic effusion (ie, complicated pneumonia).

Objectives: To determine the frequency of positive blood and pleural fluid cultures in children with complicated pneumonia and to determine whether broad-range 16S rRNA polymerase chain reaction (PCR) improves identification of a microbiologic cause.

Methods: This prospective cohort study included children 1-18 years of age hospitalized with complicated pneumonia.

Results: Pleural fluid drainage was performed in 64 (51.6%) of 124 children with complicated pneumonia. A microbiologic cause was identified in 11 of 64 patients (17.2%; 95% confidence interval [CI]: 8.9%-28.7%). Bacteria were isolated from pleural fluid culture in 6 of 64 patients (9.4 %; 95% CI: 3.5%-19.3%) undergoing pleural drainage; the causative bacteria were Staphylococcus aureus (n = 5) and Streptococcus pneumoniae (n = 1). Blood culture identified a bacterial cause in 3 of 44 cases (6.8%; 95% CI: 1.4%-18.7%) undergoing pleural fluid drainage; S. pneumoniae (n = 1), Haemophilus influenzae (n = 1), and S. aureus (n = 1) were isolated. Only 3 of the 19 pleural fluid samples (15.8%; 95% CI: 3.4%-39.6%) analyzed with 16S rRNA PCR were positive. S. pneumoniae was the only organism detected in all three samples; two of these three had negative pleural fluid cultures and absence of bacteria on Gram stain. S. aureus was isolated from pleural fluid culture in one patient with a negative 16S rRNA PCR test.

Conclusions: Causative bacteria were infrequently identified in children with complicated pneumonia. Broad-range 16S rRNA PCR only modestly improved the microbiologic yield over conventional culture methods.

Keywords: Staphylococcus aureus; Streptococcus pneumoniae; empyema; molecular diagnostic techniques; pneumonia, bacterial; polymerase chain reaction.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Child
  • Child, Preschool
  • Cohort Studies
  • Female
  • Humans
  • Infant
  • Male
  • Pleural Effusion / diagnosis
  • Pleural Effusion / genetics
  • Pleural Effusion / microbiology
  • Pneumonia, Bacterial / diagnosis*
  • Pneumonia, Bacterial / genetics
  • Pneumonia, Bacterial / microbiology*
  • Polymerase Chain Reaction / methods*
  • Prospective Studies
  • Staphylococcus aureus / genetics
  • Staphylococcus aureus / isolation & purification*
  • Streptococcus pneumoniae / genetics
  • Streptococcus pneumoniae / isolation & purification*