Genomic analysis and mRNA expression of equine type I interferon genes

J Interferon Cytokine Res. 2013 Dec;33(12):746-59. doi: 10.1089/jir.2012.0130. Epub 2013 Jun 17.

Abstract

This study aimed at identifying all of the type I interferon (IFN) genes of the horse and at monitoring their expression in equine cells on in vitro induction. We identified 32 putative type I IFN loci on horse chromosome 23 and an unplaced genomic scaffold. A phylogentic analysis characterized these into 8 different type I IFN classes, that is, putative functional genes for 6 IFN-α, 4 IFN-β, 8 IFN-ω (plus 4 pseudogenes), 3 IFN-δ (plus 1 pseudogene), 1 IFN-κ and 1 IFN-ε, plus 1 IFN-ν pseudogene, and 3 loci belonging to what has previously been called IFN-αω. Our analyses indicate that the IFN-αω genes are quite distinct from both IFN-α and IFN-ω, and we refer to this type I IFN as IFN-μ. Results from cell cultures showed that leukocytes readily expressed IFN-α, IFN-β, IFN-δ, IFN-μ, and IFN-ω mRNA on induction with, for example, live virus; while fibroblasts only expressed IFN-β mRNA on stimulation. IFN-κ or IFN-ε expression was not consistently induced in these cell cultures. Thus, the equine type I IFN family comprised 8 classes, 7 of which had putative functional genes, and mRNA expression of 5 was induced in vitro. Moreover, a relatively low number of IFN-α subtypes was found in the horse compared with other eutherian mammals.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Chromosome Mapping
  • Gene Expression*
  • Gene Order
  • Genomics*
  • Horses
  • Interferon Type I / genetics*
  • Interferon Type I / metabolism
  • Interferon-alpha / genetics
  • Interferon-alpha / metabolism
  • Molecular Sequence Annotation
  • Multigene Family
  • Open Reading Frames
  • Phylogeny
  • RNA, Messenger / genetics*

Substances

  • Interferon Type I
  • Interferon-alpha
  • RNA, Messenger