Increasing prion propensity by hydrophobic insertion

PLoS One. 2014 Feb 20;9(2):e89286. doi: 10.1371/journal.pone.0089286. eCollection 2014.

Abstract

Prion formation involves the conversion of proteins from a soluble form into an infectious amyloid form. Most yeast prion proteins contain glutamine/asparagine-rich regions that are responsible for prion aggregation. Prion formation by these domains is driven primarily by amino acid composition, not primary sequence, yet there is a surprising disconnect between the amino acids thought to have the highest aggregation propensity and those that are actually found in yeast prion domains. Specifically, a recent mutagenic screen suggested that both aromatic and non-aromatic hydrophobic residues strongly promote prion formation. However, while aromatic residues are common in yeast prion domains, non-aromatic hydrophobic residues are strongly under-represented. Here, we directly test the effects of hydrophobic and aromatic residues on prion formation. Remarkably, we found that insertion of as few as two hydrophobic residues resulted in a multiple orders-of-magnitude increase in prion formation, and significant acceleration of in vitro amyloid formation. Thus, insertion or deletion of hydrophobic residues provides a simple tool to control the prion activity of a protein. These data, combined with bioinformatics analysis, suggest a limit on the number of strongly prion-promoting residues tolerated in glutamine/asparagine-rich domains. This limit may explain the under-representation of non-aromatic hydrophobic residues in yeast prion domains. Prion activity requires not only that a protein be able to form prion fibers, but also that these fibers be cleaved to generate new independently-segregating aggregates to offset dilution by cell division. Recent studies suggest that aromatic residues, but not non-aromatic hydrophobic residues, support the fiber cleavage step. Therefore, we propose that while both aromatic and non-aromatic hydrophobic residues promote prion formation, aromatic residues are favored in yeast prion domains because they serve a dual function, promoting both prion formation and chaperone-dependent prion propagation.

Publication types

  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Amino Acid Sequence
  • Amyloid / metabolism*
  • Asparagine / genetics
  • Asparagine / metabolism*
  • Blotting, Western
  • Computational Biology
  • Glutamine / genetics
  • Glutamine / metabolism*
  • Hydrophobic and Hydrophilic Interactions*
  • Molecular Sequence Data
  • Mutagenesis
  • Mutation / genetics
  • Prions / genetics
  • Prions / metabolism*
  • Saccharomyces cerevisiae / genetics
  • Saccharomyces cerevisiae / metabolism*
  • Saccharomyces cerevisiae Proteins / genetics
  • Saccharomyces cerevisiae Proteins / metabolism*
  • Sequence Homology, Amino Acid
  • Tyrosine / genetics
  • Tyrosine / metabolism

Substances

  • Amyloid
  • Prions
  • Saccharomyces cerevisiae Proteins
  • Glutamine
  • Tyrosine
  • Asparagine

Grants and funding

This work was supported by a National Science Foundation grant (MCB-1023771) to EDR. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.