Detection of uridylated mRNAs

Methods Mol Biol. 2014:1125:43-51. doi: 10.1007/978-1-62703-971-0_4.

Abstract

Uridine addition at the 3' end of RNAs (i.e., uridylation) emerges as a critical posttranscriptional modification promoting RNA degradation. Uridylation has been notably linked to the degradation of small RNAs, correlated with the 5' shortening of RISC-cleaved transcripts and the degradation of mRNAs. We describe here a method based on 3' RACE (3' Rapid Amplification of cDNA End) PCR that has been successfully used to investigate nucleotide addition at the 3' end of RISC-cleaved transcripts and full-length mRNAs in plants.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • RNA Processing, Post-Transcriptional
  • RNA, Messenger / analysis*
  • RNA, Messenger / chemistry*
  • RNA, Messenger / genetics
  • RNA, Plant / chemistry
  • RNA, Plant / genetics
  • Uridine / chemistry*

Substances

  • RNA, Messenger
  • RNA, Plant
  • Uridine