Testing Landscape Theory for Biomolecular Processes with Single Molecule Fluorescence Spectroscopy

Phys Rev Lett. 2015 Jul 3;115(1):018101. doi: 10.1103/PhysRevLett.115.018101. Epub 2015 Jul 1.

Abstract

Although Kramers' theory for diffusive barrier crossing on a 1D free energy profile plays a central role in landscape theory for complex biomolecular processes, it has not yet been rigorously tested by experiment. Here we test this 1D diffusion scenario with single molecule fluorescence measurements of DNA hairpin folding. We find an upper bound of 2.5 μs for the average transition path time, consistent with the predictions by theory with parameters determined from optical tweezer measurements.

Publication types

  • Research Support, N.I.H., Intramural

MeSH terms

  • DNA, Single-Stranded / chemistry*
  • Diffusion
  • Macromolecular Substances / chemistry*
  • Models, Chemical*
  • Nucleic Acid Conformation
  • Optical Tweezers
  • Spectrometry, Fluorescence / methods*
  • Thermodynamics

Substances

  • DNA, Single-Stranded
  • Macromolecular Substances