A small step towards an important goal: fragment screen of the c-di-AMP-synthesizing enzyme CdaA

Acta Crystallogr D Struct Biol. 2024 May 1;80(Pt 5):350-361. doi: 10.1107/S205979832400336X. Epub 2024 Apr 29.

Abstract

CdaA is the most widespread diadenylate cyclase in many bacterial species, including several multidrug-resistant human pathogens. The enzymatic product of CdaA, cyclic di-AMP, is a secondary messenger that is essential for the viability of many bacteria. Its absence in humans makes CdaA a very promising and attractive target for the development of new antibiotics. Here, the structural results are presented of a crystallographic fragment screen against CdaA from Listeria monocytogenes, a saprophytic Gram-positive bacterium and an opportunistic food-borne pathogen that can cause listeriosis in humans and animals. Two of the eight fragment molecules reported here were localized in the highly conserved ATP-binding site. These fragments could serve as potential starting points for the development of antibiotics against several CdaA-dependent bacterial species.

Keywords: CdaA; Listeria monocytogenes; crystallographic fragment screening; cyclic di-AMP; drug design.

MeSH terms

  • Anti-Bacterial Agents / pharmacology
  • Bacterial Proteins / chemistry
  • Bacterial Proteins / metabolism
  • Binding Sites
  • Crystallography, X-Ray / methods
  • Dinucleoside Phosphates / chemistry
  • Dinucleoside Phosphates / metabolism
  • Humans
  • Listeria monocytogenes* / enzymology
  • Models, Molecular
  • Phosphorus-Oxygen Lyases / chemistry
  • Phosphorus-Oxygen Lyases / metabolism
  • Protein Conformation

Substances

  • cyclic diadenosine phosphate
  • Bacterial Proteins
  • Dinucleoside Phosphates
  • Anti-Bacterial Agents
  • Phosphorus-Oxygen Lyases