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Application of asymmetric statistical potentials to antibody-protein docking.
Brenke R, Hall DR, Chuang GY, Comeau SR, Bohnuud T, Beglov D, Schueler-Furman O, Vajda S, Kozakov D. Brenke R, et al. Among authors: hall dr. Bioinformatics. 2012 Oct 15;28(20):2608-14. doi: 10.1093/bioinformatics/bts493. Bioinformatics. 2012. PMID: 23053206 Free PMC article.
Sampling and scoring: a marriage made in heaven.
Vajda S, Hall DR, Kozakov D. Vajda S, et al. Among authors: hall dr. Proteins. 2013 Nov;81(11):1874-84. doi: 10.1002/prot.24343. Epub 2013 Aug 19. Proteins. 2013. PMID: 23775627 Free PMC article. Review.
How good is automated protein docking?
Kozakov D, Beglov D, Bohnuud T, Mottarella SE, Xia B, Hall DR, Vajda S. Kozakov D, et al. Among authors: hall dr. Proteins. 2013 Dec;81(12):2159-66. doi: 10.1002/prot.24403. Epub 2013 Oct 17. Proteins. 2013. PMID: 23996272 Free PMC article.
Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment.
Lensink MF, Velankar S, Kryshtafovych A, Huang SY, Schneidman-Duhovny D, Sali A, Segura J, Fernandez-Fuentes N, Viswanath S, Elber R, Grudinin S, Popov P, Neveu E, Lee H, Baek M, Park S, Heo L, Rie Lee G, Seok C, Qin S, Zhou HX, Ritchie DW, Maigret B, Devignes MD, Ghoorah A, Torchala M, Chaleil RA, Bates PA, Ben-Zeev E, Eisenstein M, Negi SS, Weng Z, Vreven T, Pierce BG, Borrman TM, Yu J, Ochsenbein F, Guerois R, Vangone A, Rodrigues JP, van Zundert G, Nellen M, Xue L, Karaca E, Melquiond AS, Visscher K, Kastritis PL, Bonvin AM, Xu X, Qiu L, Yan C, Li J, Ma Z, Cheng J, Zou X, Shen Y, Peterson LX, Kim HR, Roy A, Han X, Esquivel-Rodriguez J, Kihara D, Yu X, Bruce NJ, Fuller JC, Wade RC, Anishchenko I, Kundrotas PJ, Vakser IA, Imai K, Yamada K, Oda T, Nakamura T, Tomii K, Pallara C, Romero-Durana M, Jiménez-García B, Moal IH, Férnandez-Recio J, Joung JY, Kim JY, Joo K, Lee J, Kozakov D, Vajda S, Mottarella S, Hall DR, Beglov D, Mamonov A, Xia B, Bohnuud T, Del Carpio CA, Ichiishi E, Marze N, Kuroda D, Roy Burman SS, Gray JJ, Chermak E, Cavallo L, Oliva R, Tovchigrechko A, Wodak SJ. Lensink MF, et al. Among authors: hall dr. Proteins. 2016 Sep;84 Suppl 1(Suppl Suppl 1):323-48. doi: 10.1002/prot.25007. Epub 2016 Jun 1. Proteins. 2016. PMID: 27122118 Free PMC article.
New additions to the ClusPro server motivated by CAPRI.
Vajda S, Yueh C, Beglov D, Bohnuud T, Mottarella SE, Xia B, Hall DR, Kozakov D. Vajda S, et al. Among authors: hall dr. Proteins. 2017 Mar;85(3):435-444. doi: 10.1002/prot.25219. Epub 2017 Jan 5. Proteins. 2017. PMID: 27936493 Free PMC article.
294 results