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Page 1
Using Sybil for interactive comparative genomics of microbes on the web.
Riley DR, Angiuoli SV, Crabtree J, Dunning Hotopp JC, Tettelin H. Riley DR, et al. Among authors: crabtree j. Bioinformatics. 2012 Jan 15;28(2):160-6. doi: 10.1093/bioinformatics/btr652. Epub 2011 Nov 24. Bioinformatics. 2012. PMID: 22121156 Free PMC article.
Ergatis: a web interface and scalable software system for bioinformatics workflows.
Orvis J, Crabtree J, Galens K, Gussman A, Inman JM, Lee E, Nampally S, Riley D, Sundaram JP, Felix V, Whitty B, Mahurkar A, Wortman J, White O, Angiuoli SV. Orvis J, et al. Among authors: crabtree j. Bioinformatics. 2010 Jun 15;26(12):1488-92. doi: 10.1093/bioinformatics/btq167. Epub 2010 Apr 22. Bioinformatics. 2010. PMID: 20413634 Free PMC article.
TwinBLAST: When Two Is Better than One.
Dunning Hotopp JC, Matsumura J, Bromley RE, Riley DR, Agrawal S, Sparklin B, Mattick J, Crabtree J, Mahurkar A. Dunning Hotopp JC, et al. Among authors: crabtree j. Microbiol Resour Announc. 2019 Aug 29;8(35):e00842-19. doi: 10.1128/MRA.00842-19. Microbiol Resour Announc. 2019. PMID: 31467106 Free PMC article.
Comparative genomics of emerging human ehrlichiosis agents.
Dunning Hotopp JC, Lin M, Madupu R, Crabtree J, Angiuoli SV, Eisen JA, Seshadri R, Ren Q, Wu M, Utterback TR, Smith S, Lewis M, Khouri H, Zhang C, Niu H, Lin Q, Ohashi N, Zhi N, Nelson W, Brinkac LM, Dodson RJ, Rosovitz MJ, Sundaram J, Daugherty SC, Davidsen T, Durkin AS, Gwinn M, Haft DH, Selengut JD, Sullivan SA, Zafar N, Zhou L, Benahmed F, Forberger H, Halpin R, Mulligan S, Robinson J, White O, Rikihisa Y, Tettelin H. Dunning Hotopp JC, et al. Among authors: crabtree j. PLoS Genet. 2006 Feb;2(2):e21. doi: 10.1371/journal.pgen.0020021. Epub 2006 Feb 17. PLoS Genet. 2006. PMID: 16482227 Free PMC article.
Comparative genomics of the neglected human malaria parasite Plasmodium vivax.
Carlton JM, Adams JH, Silva JC, Bidwell SL, Lorenzi H, Caler E, Crabtree J, Angiuoli SV, Merino EF, Amedeo P, Cheng Q, Coulson RM, Crabb BS, Del Portillo HA, Essien K, Feldblyum TV, Fernandez-Becerra C, Gilson PR, Gueye AH, Guo X, Kang'a S, Kooij TW, Korsinczky M, Meyer EV, Nene V, Paulsen I, White O, Ralph SA, Ren Q, Sargeant TJ, Salzberg SL, Stoeckert CJ, Sullivan SA, Yamamoto MM, Hoffman SL, Wortman JR, Gardner MJ, Galinski MR, Barnwell JW, Fraser-Liggett CM. Carlton JM, et al. Among authors: crabtree j. Nature. 2008 Oct 9;455(7214):757-63. doi: 10.1038/nature07327. Nature. 2008. PMID: 18843361 Free PMC article.
Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: implications for the microbial "pan-genome".
Tettelin H, Masignani V, Cieslewicz MJ, Donati C, Medini D, Ward NL, Angiuoli SV, Crabtree J, Jones AL, Durkin AS, Deboy RT, Davidsen TM, Mora M, Scarselli M, Margarit y Ros I, Peterson JD, Hauser CR, Sundaram JP, Nelson WC, Madupu R, Brinkac LM, Dodson RJ, Rosovitz MJ, Sullivan SA, Daugherty SC, Haft DH, Selengut J, Gwinn ML, Zhou L, Zafar N, Khouri H, Radune D, Dimitrov G, Watkins K, O'Connor KJ, Smith S, Utterback TR, White O, Rubens CE, Grandi G, Madoff LC, Kasper DL, Telford JL, Wessels MR, Rappuoli R, Fraser CM. Tettelin H, et al. Among authors: crabtree j. Proc Natl Acad Sci U S A. 2005 Sep 27;102(39):13950-5. doi: 10.1073/pnas.0506758102. Epub 2005 Sep 19. Proc Natl Acad Sci U S A. 2005. PMID: 16172379 Free PMC article.
Strains used in whole organism Plasmodium falciparum vaccine trials differ in genome structure, sequence, and immunogenic potential.
Moser KA, Drábek EF, Dwivedi A, Stucke EM, Crabtree J, Dara A, Shah Z, Adams M, Li T, Rodrigues PT, Koren S, Phillippy AM, Munro JB, Ouattara A, Sparklin BC, Dunning Hotopp JC, Lyke KE, Sadzewicz L, Tallon LJ, Spring MD, Jongsakul K, Lon C, Saunders DL, Ferreira MU, Nyunt MM, Laufer MK, Travassos MA, Sauerwein RW, Takala-Harrison S, Fraser CM, Sim BKL, Hoffman SL, Plowe CV, Silva JC. Moser KA, et al. Among authors: crabtree j. Genome Med. 2020 Jan 8;12(1):6. doi: 10.1186/s13073-019-0708-9. Genome Med. 2020. PMID: 31915075 Free PMC article.
512 results