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Using Sybil for interactive comparative genomics of microbes on the web.
Riley DR, Angiuoli SV, Crabtree J, Dunning Hotopp JC, Tettelin H. Riley DR, et al. Among authors: dunning hotopp jc. Bioinformatics. 2012 Jan 15;28(2):160-6. doi: 10.1093/bioinformatics/btr652. Epub 2011 Nov 24. Bioinformatics. 2012. PMID: 22121156 Free PMC article.
Comparative genomics of emerging human ehrlichiosis agents.
Dunning Hotopp JC, Lin M, Madupu R, Crabtree J, Angiuoli SV, Eisen JA, Seshadri R, Ren Q, Wu M, Utterback TR, Smith S, Lewis M, Khouri H, Zhang C, Niu H, Lin Q, Ohashi N, Zhi N, Nelson W, Brinkac LM, Dodson RJ, Rosovitz MJ, Sundaram J, Daugherty SC, Davidsen T, Durkin AS, Gwinn M, Haft DH, Selengut JD, Sullivan SA, Zafar N, Zhou L, Benahmed F, Forberger H, Halpin R, Mulligan S, Robinson J, White O, Rikihisa Y, Tettelin H. Dunning Hotopp JC, et al. PLoS Genet. 2006 Feb;2(2):e21. doi: 10.1371/journal.pgen.0020021. Epub 2006 Feb 17. PLoS Genet. 2006. PMID: 16482227 Free PMC article.
Widespread lateral gene transfer from intracellular bacteria to multicellular eukaryotes.
Dunning Hotopp JC, Clark ME, Oliveira DC, Foster JM, Fischer P, Muñoz Torres MC, Giebel JD, Kumar N, Ishmael N, Wang S, Ingram J, Nene RV, Shepard J, Tomkins J, Richards S, Spiro DJ, Ghedin E, Slatko BE, Tettelin H, Werren JH. Dunning Hotopp JC, et al. Science. 2007 Sep 21;317(5845):1753-6. doi: 10.1126/science.1142490. Epub 2007 Aug 30. Science. 2007. PMID: 17761848
Parasitism and mutualism in Wolbachia: what the phylogenomic trees can and cannot say.
Bordenstein SR, Paraskevopoulos C, Dunning Hotopp JC, Sapountzis P, Lo N, Bandi C, Tettelin H, Werren JH, Bourtzis K. Bordenstein SR, et al. Among authors: dunning hotopp jc. Mol Biol Evol. 2009 Jan;26(1):231-41. doi: 10.1093/molbev/msn243. Epub 2008 Oct 28. Mol Biol Evol. 2009. PMID: 18974066 Free PMC article.
Structure and dynamics of the pan-genome of Streptococcus pneumoniae and closely related species.
Donati C, Hiller NL, Tettelin H, Muzzi A, Croucher NJ, Angiuoli SV, Oggioni M, Dunning Hotopp JC, Hu FZ, Riley DR, Covacci A, Mitchell TJ, Bentley SD, Kilian M, Ehrlich GD, Rappuoli R, Moxon ER, Masignani V. Donati C, et al. Among authors: dunning hotopp jc. Genome Biol. 2010;11(10):R107. doi: 10.1186/gb-2010-11-10-r107. Epub 2010 Oct 29. Genome Biol. 2010. PMID: 21034474 Free PMC article.
Neisseria meningitidis is structured in clades associated with restriction modification systems that modulate homologous recombination.
Budroni S, Siena E, Dunning Hotopp JC, Seib KL, Serruto D, Nofroni C, Comanducci M, Riley DR, Daugherty SC, Angiuoli SV, Covacci A, Pizza M, Rappuoli R, Moxon ER, Tettelin H, Medini D. Budroni S, et al. Among authors: dunning hotopp jc. Proc Natl Acad Sci U S A. 2011 Mar 15;108(11):4494-9. doi: 10.1073/pnas.1019751108. Epub 2011 Feb 28. Proc Natl Acad Sci U S A. 2011. PMID: 21368196 Free PMC article.
77 results