Moghadasi M - Search Results

1

A Message Passing Approach to Side Chain Positioning with Applications in Protein Docking Refinement.

Moghadasi M, Kozakov D, Mamonov AB, Vakili P, Vajda S, Paschalidis IC. Moghadasi M, et al. Proc IEEE Conf Decis Control. 2012:2310-2315. doi: 10.1109/cdc.2012.6426600. Proc IEEE Conf Decis Control. 2012. PMID: 23515575 Free PMC article.

2

A New Distributed Algorithm for Side-Chain Positioning in the Process of Protein Docking^*.

Moghadasi M, Kozakov D, Vakili P, Vajda S, Paschalidis IC. Moghadasi M, et al. Proc IEEE Conf Decis Control. 2013:739-744. doi: 10.1109/CDC.2013.6759970. Proc IEEE Conf Decis Control. 2013. PMID: 24844567 Free PMC article.

3

The impact of side-chain packing on protein docking refinement.

Moghadasi M, Mirzaei H, Mamonov A, Vakili P, Vajda S, Paschalidis ICh, Kozakov D. Moghadasi M, et al. J Chem Inf Model. 2015 Apr 27;55(4):872-81. doi: 10.1021/ci500380a. Epub 2015 Mar 24. J Chem Inf Model. 2015. PMID: 25714358 Free PMC article.

4

A Subspace Semi-Definite programming-based Underestimation (SSDU) method for stochastic global optimization in protein docking.

Nan F, Moghadasi M, Vakili P, Vajda S, Kozakov D, Ch Paschalidis I. Nan F, et al. Among authors: moghadasi m. Proc IEEE Conf Decis Control. 2014 Dec;2014:4623-4628. doi: 10.1109/CDC.2014.7040111. Proc IEEE Conf Decis Control. 2014. PMID: 25914440 Free PMC article.

5

Focused grid-based resampling for protein docking and mapping.

Mamonov AB, Moghadasi M, Mirzaei H, Zarbafian S, Grove LE, Bohnuud T, Vakili P, Ch Paschalidis I, Vajda S, Kozakov D. Mamonov AB, et al. Among authors: moghadasi m. J Comput Chem. 2016 Apr 30;37(11):961-70. doi: 10.1002/jcc.24273. Epub 2016 Feb 2. J Comput Chem. 2016. PMID: 26837000 Free PMC article.

6

Protein docking refinement by convex underestimation in the low-dimensional subspace of encounter complexes.

Zarbafian S, Moghadasi M, Roshandelpoor A, Nan F, Li K, Vakli P, Vajda S, Kozakov D, Paschalidis IC. Zarbafian S, et al. Among authors: moghadasi m. Sci Rep. 2018 Apr 12;8(1):5896. doi: 10.1038/s41598-018-23982-3. Sci Rep. 2018. PMID: 29650980 Free PMC article.

7

Protein-ligand docking using FFT based sampling: D3R case study.

Padhorny D, Hall DR, Mirzaei H, Mamonov AB, Moghadasi M, Alekseenko A, Beglov D, Kozakov D. Padhorny D, et al. Among authors: moghadasi m. J Comput Aided Mol Des. 2018 Jan;32(1):225-230. doi: 10.1007/s10822-017-0069-7. Epub 2017 Nov 3. J Comput Aided Mol Des. 2018. PMID: 29101520 Free PMC article.

8

Efficient Maintenance and Update of Nonbonded Lists in Macromolecular Simulations.

Chowdhury R, Beglov D, Moghadasi M, Paschalidis IC, Vakili P, Vajda S, Bajaj C, Kozakov D. Chowdhury R, et al. Among authors: moghadasi m. J Chem Theory Comput. 2014 Oct 14;10(10):4449-4454. doi: 10.1021/ct400474w. Epub 2014 Sep 5. J Chem Theory Comput. 2014. PMID: 25328494 Free PMC article.

9

Development of an oxide-dispersion-strengthened steel by introducing oxygen carrier compound into the melt aided by a general thermodynamic model.

Moghadasi MA, Nili-Ahmadabadi M, Forghani F, Kim HS. Moghadasi MA, et al. Sci Rep. 2016 Dec 12;6:38621. doi: 10.1038/srep38621. Sci Rep. 2016. PMID: 27941814 Free PMC article.

10

Interaction of aerobic exercise and crocin improves memory, learning and hypocampic tau and neurotrophins gene expression in rats treated with trimethytin as a model of Alzheimer's disease.

Moghadasi M, Akbari F, Najafi P. Moghadasi M, et al. Mol Biol Rep. 2024 Jan 16;51(1):111. doi: 10.1007/s11033-023-09197-4. Mol Biol Rep. 2024. PMID: 38227208

Save citations to file

Email citations

Send citations to clipboard

Add to Collections

Add to My Bibliography

Create a file for external citation management software

Your saved search

Your RSS Feed

My NCBI Filters

Text availability

Article attribute

Article type

Publication date

46 results

Search Page