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Dynamics of viral evolution and neutralizing antibody response after HIV-1 superinfection.
J Virol. 2013 Dec;87(23):12737-44. doi: 10.1128/JVI.02260-13. Epub 2013 Sep 18.
J Virol. 2013.
PMID: 24049166
Free PMC article.
IDEPI: rapid prediction of HIV-1 antibody epitopes and other phenotypic features from sequence data using a flexible machine learning platform.
Hepler NL, Scheffler K, Weaver S, Murrell B, Richman DD, Burton DR, Poignard P, Smith DM, Kosakovsky Pond SL.
Hepler NL, et al.
PLoS Comput Biol. 2014 Sep 25;10(9):e1003842. doi: 10.1371/journal.pcbi.1003842. eCollection 2014 Sep.
PLoS Comput Biol. 2014.
PMID: 25254639
Free PMC article.
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The global transmission network of HIV-1.
Wertheim JO, Leigh Brown AJ, Hepler NL, Mehta SR, Richman DD, Smith DM, Kosakovsky Pond SL.
Wertheim JO, et al. Among authors: hepler nl.
J Infect Dis. 2014 Jan 15;209(2):304-13. doi: 10.1093/infdis/jit524. Epub 2013 Oct 22.
J Infect Dis. 2014.
PMID: 24151309
Free PMC article.
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HyPhy 2.5-A Customizable Platform for Evolutionary Hypothesis Testing Using Phylogenies.
Kosakovsky Pond SL, Poon AFY, Velazquez R, Weaver S, Hepler NL, Murrell B, Shank SD, Magalis BR, Bouvier D, Nekrutenko A, Wisotsky S, Spielman SJ, Frost SDW, Muse SV.
Kosakovsky Pond SL, et al. Among authors: hepler nl.
Mol Biol Evol. 2020 Jan 1;37(1):295-299. doi: 10.1093/molbev/msz197.
Mol Biol Evol. 2020.
PMID: 31504749
Free PMC article.
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Functional antibodies exhibit light chain coherence.
Jaffe DB, Shahi P, Adams BA, Chrisman AM, Finnegan PM, Raman N, Royall AE, Tsai F, Vollbrecht T, Reyes DS, Hepler NL, McDonnell WJ.
Jaffe DB, et al. Among authors: hepler nl.
Nature. 2022 Nov;611(7935):352-357. doi: 10.1038/s41586-022-05371-z. Epub 2022 Oct 26.
Nature. 2022.
PMID: 36289331
Free PMC article.
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Pacific Biosciences Sequencing and IMGT/HighV-QUEST Analysis of Full-Length Single Chain Fragment Variable from an In Vivo Selected Phage-Display Combinatorial Library.
Hemadou A, Giudicelli V, Smith ML, Lefranc MP, Duroux P, Kossida S, Heiner C, Hepler NL, Kuijpers J, Groppi A, Korlach J, Mondon P, Ottones F, Jacobin-Valat MJ, Laroche-Traineau J, Clofent-Sanchez G.
Hemadou A, et al. Among authors: hepler nl.
Front Immunol. 2017 Dec 20;8:1796. doi: 10.3389/fimmu.2017.01796. eCollection 2017.
Front Immunol. 2017.
PMID: 29326697
Free PMC article.
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PRFdb: a database of computationally predicted eukaryotic programmed -1 ribosomal frameshift signals.
Belew AT, Hepler NL, Jacobs JL, Dinman JD.
Belew AT, et al. Among authors: hepler nl.
BMC Genomics. 2008 Jul 17;9:339. doi: 10.1186/1471-2164-9-339.
BMC Genomics. 2008.
PMID: 18637175
Free PMC article.
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