Kahraman A - Search Results

1

Cross-link guided molecular modeling with ROSETTA.

Kahraman A, Herzog F, Leitner A, Rosenberger G, Aebersold R, Malmström L. Kahraman A, et al. PLoS One. 2013 Sep 17;8(9):e73411. doi: 10.1371/journal.pone.0073411. eCollection 2013. PLoS One. 2013. PMID: 24069194 Free PMC article.

2

Probing native protein structures by chemical cross-linking, mass spectrometry, and bioinformatics.

Leitner A, Walzthoeni T, Kahraman A, Herzog F, Rinner O, Beck M, Aebersold R. Leitner A, et al. Among authors: kahraman a. Mol Cell Proteomics. 2010 Aug;9(8):1634-49. doi: 10.1074/mcp.R000001-MCP201. Epub 2010 Mar 31. Mol Cell Proteomics. 2010. PMID: 20360032 Free PMC article. Review.

3

Xwalk: computing and visualizing distances in cross-linking experiments.

Kahraman A, Malmström L, Aebersold R. Kahraman A, et al. Bioinformatics. 2011 Aug 1;27(15):2163-4. doi: 10.1093/bioinformatics/btr348. Epub 2011 Jun 11. Bioinformatics. 2011. PMID: 21666267 Free PMC article.

4

Structural probing of a protein phosphatase 2A network by chemical cross-linking and mass spectrometry.

Herzog F, Kahraman A, Boehringer D, Mak R, Bracher A, Walzthoeni T, Leitner A, Beck M, Hartl FU, Ban N, Malmström L, Aebersold R. Herzog F, et al. Among authors: kahraman a. Science. 2012 Sep 14;337(6100):1348-52. doi: 10.1126/science.1221483. Science. 2012. PMID: 22984071

5

xVis: a web server for the schematic visualization and interpretation of crosslink-derived spatial restraints.

Grimm M, Zimniak T, Kahraman A, Herzog F. Grimm M, et al. Among authors: kahraman a. Nucleic Acids Res. 2015 Jul 1;43(W1):W362-9. doi: 10.1093/nar/gkv463. Epub 2015 May 8. Nucleic Acids Res. 2015. PMID: 25956653 Free PMC article.

6

Molecular Details Underlying Dynamic Structures and Regulation of the Human 26S Proteasome.

Wang X, Cimermancic P, Yu C, Schweitzer A, Chopra N, Engel JL, Greenberg C, Huszagh AS, Beck F, Sakata E, Yang Y, Novitsky EJ, Leitner A, Nanni P, Kahraman A, Guo X, Dixon JE, Rychnovsky SD, Aebersold R, Baumeister W, Sali A, Huang L. Wang X, et al. Among authors: kahraman a. Mol Cell Proteomics. 2017 May;16(5):840-854. doi: 10.1074/mcp.M116.065326. Epub 2017 Mar 14. Mol Cell Proteomics. 2017. PMID: 28292943 Free PMC article.

7

Global analysis of protein structural changes in complex proteomes.

Feng Y, De Franceschi G, Kahraman A, Soste M, Melnik A, Boersema PJ, de Laureto PP, Nikolaev Y, Oliveira AP, Picotti P. Feng Y, et al. Among authors: kahraman a. Nat Biotechnol. 2014 Oct;32(10):1036-44. doi: 10.1038/nbt.2999. Epub 2014 Sep 14. Nat Biotechnol. 2014. PMID: 25218519

8

Measuring protein structural changes on a proteome-wide scale using limited proteolysis-coupled mass spectrometry.

Schopper S, Kahraman A, Leuenberger P, Feng Y, Piazza I, Müller O, Boersema PJ, Picotti P. Schopper S, et al. Among authors: kahraman a. Nat Protoc. 2017 Nov;12(11):2391-2410. doi: 10.1038/nprot.2017.100. Epub 2017 Oct 26. Nat Protoc. 2017. PMID: 29072706

9

Cell-wide analysis of protein thermal unfolding reveals determinants of thermostability.

Leuenberger P, Ganscha S, Kahraman A, Cappelletti V, Boersema PJ, von Mering C, Claassen M, Picotti P. Leuenberger P, et al. Among authors: kahraman a. Science. 2017 Feb 24;355(6327):eaai7825. doi: 10.1126/science.aai7825. Science. 2017. PMID: 28232526

10

SCIM: universal single-cell matching with unpaired feature sets.

Stark SG, Ficek J, Locatello F, Bonilla X, Chevrier S, Singer F; Tumor Profiler Consortium; Rätsch G, Lehmann KV. Stark SG, et al. Bioinformatics. 2020 Dec 30;36(Suppl_2):i919-i927. doi: 10.1093/bioinformatics/btaa843. Bioinformatics. 2020. PMID: 33381818 Free PMC article.

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