Navarro P - Search Results

1

OpenSWATH enables automated, targeted analysis of data-independent acquisition MS data.

Röst HL, Rosenberger G, Navarro P, Gillet L, Miladinović SM, Schubert OT, Wolski W, Collins BC, Malmström J, Malmström L, Aebersold R. Röst HL, et al. Among authors: navarro p. Nat Biotechnol. 2014 Mar;32(3):219-23. doi: 10.1038/nbt.2841. Nat Biotechnol. 2014. PMID: 24727770 No abstract available.

2

Building high-quality assay libraries for targeted analysis of SWATH MS data.

Schubert OT, Gillet LC, Collins BC, Navarro P, Rosenberger G, Wolski WE, Lam H, Amodei D, Mallick P, MacLean B, Aebersold R. Schubert OT, et al. Among authors: navarro p. Nat Protoc. 2015 Mar;10(3):426-41. doi: 10.1038/nprot.2015.015. Epub 2015 Feb 12. Nat Protoc. 2015. PMID: 25675208

3

TRIC: an automated alignment strategy for reproducible protein quantification in targeted proteomics.

Röst HL, Liu Y, D'Agostino G, Zanella M, Navarro P, Rosenberger G, Collins BC, Gillet L, Testa G, Malmström L, Aebersold R. Röst HL, et al. Among authors: navarro p. Nat Methods. 2016 Sep;13(9):777-83. doi: 10.1038/nmeth.3954. Epub 2016 Aug 1. Nat Methods. 2016. PMID: 27479329 Free PMC article.

4

A multicenter study benchmarks software tools for label-free proteome quantification.

Navarro P, Kuharev J, Gillet LC, Bernhardt OM, MacLean B, Röst HL, Tate SA, Tsou CC, Reiter L, Distler U, Rosenberger G, Perez-Riverol Y, Nesvizhskii AI, Aebersold R, Tenzer S. Navarro P, et al. Nat Biotechnol. 2016 Nov;34(11):1130-1136. doi: 10.1038/nbt.3685. Epub 2016 Oct 3. Nat Biotechnol. 2016. PMID: 27701404 Free PMC article.

5

Publisher Correction: OpenSWATH enables automated, targeted analysis of data-independent acquisition MS data.

Röst HL, Rosenberger G, Navarro P, Gillet L, Miladinović SM, Schubert OT, Wolski W, Collins BC, Malmström J, Malmström L, Aebersold R. Röst HL, et al. Among authors: navarro p. Nat Biotechnol. 2020 Mar;38(3):374. doi: 10.1038/s41587-020-0457-8. Nat Biotechnol. 2020. PMID: 32094660

6

Conserved peptide fragmentation as a benchmarking tool for mass spectrometers and a discriminating feature for targeted proteomics.

Toprak UH, Gillet LC, Maiolica A, Navarro P, Leitner A, Aebersold R. Toprak UH, et al. Among authors: navarro p. Mol Cell Proteomics. 2014 Aug;13(8):2056-71. doi: 10.1074/mcp.O113.036475. Epub 2014 Mar 12. Mol Cell Proteomics. 2014. PMID: 24623587 Free PMC article.

7

Targeted data extraction of the MS/MS spectra generated by data-independent acquisition: a new concept for consistent and accurate proteome analysis.

Gillet LC, Navarro P, Tate S, Röst H, Selevsek N, Reiter L, Bonner R, Aebersold R. Gillet LC, et al. Among authors: navarro p. Mol Cell Proteomics. 2012 Jun;11(6):O111.016717. doi: 10.1074/mcp.O111.016717. Epub 2012 Jan 18. Mol Cell Proteomics. 2012. PMID: 22261725 Free PMC article.

8

Quantitative measurements of N-linked glycoproteins in human plasma by SWATH-MS.

Liu Y, Hüttenhain R, Surinova S, Gillet LC, Mouritsen J, Brunner R, Navarro P, Aebersold R. Liu Y, et al. Among authors: navarro p. Proteomics. 2013 Apr;13(8):1247-56. doi: 10.1002/pmic.201200417. Epub 2013 Mar 11. Proteomics. 2013. PMID: 23322582

9

Reproducible and consistent quantification of the Saccharomyces cerevisiae proteome by SWATH-mass spectrometry.

Selevsek N, Chang CY, Gillet LC, Navarro P, Bernhardt OM, Reiter L, Cheng LY, Vitek O, Aebersold R. Selevsek N, et al. Among authors: navarro p. Mol Cell Proteomics. 2015 Mar;14(3):739-49. doi: 10.1074/mcp.M113.035550. Epub 2015 Jan 5. Mol Cell Proteomics. 2015. PMID: 25561506 Free PMC article.

10

An open-source computational and data resource to analyze digital maps of immunopeptidomes.

Caron E, Espona L, Kowalewski DJ, Schuster H, Ternette N, Alpízar A, Schittenhelm RB, Ramarathinam SH, Lindestam Arlehamn CS, Chiek Koh C, Gillet LC, Rabsteyn A, Navarro P, Kim S, Lam H, Sturm T, Marcilla M, Sette A, Campbell DS, Deutsch EW, Moritz RL, Purcell AW, Rammensee HG, Stevanovic S, Aebersold R. Caron E, et al. Among authors: navarro p. Elife. 2015 Jul 8;4:e07661. doi: 10.7554/eLife.07661. Elife. 2015. PMID: 26154972 Free PMC article.

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