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Building high-quality assay libraries for targeted analysis of SWATH MS data.
Schubert OT, Gillet LC, Collins BC, Navarro P, Rosenberger G, Wolski WE, Lam H, Amodei D, Mallick P, MacLean B, Aebersold R. Schubert OT, et al. Among authors: aebersold r. Nat Protoc. 2015 Mar;10(3):426-41. doi: 10.1038/nprot.2015.015. Epub 2015 Feb 12. Nat Protoc. 2015. PMID: 25675208
Mass spectrometry-based proteomics.
Aebersold R, Mann M. Aebersold R, et al. Nature. 2003 Mar 13;422(6928):198-207. doi: 10.1038/nature01511. Nature. 2003. PMID: 12634793 Review.
A common open representation of mass spectrometry data and its application to proteomics research.
Pedrioli PG, Eng JK, Hubley R, Vogelzang M, Deutsch EW, Raught B, Pratt B, Nilsson E, Angeletti RH, Apweiler R, Cheung K, Costello CE, Hermjakob H, Huang S, Julian RK, Kapp E, McComb ME, Oliver SG, Omenn G, Paton NW, Simpson R, Smith R, Taylor CF, Zhu W, Aebersold R. Pedrioli PG, et al. Among authors: aebersold r. Nat Biotechnol. 2004 Nov;22(11):1459-66. doi: 10.1038/nbt1031. Nat Biotechnol. 2004. PMID: 15529173
High throughput proteome screening for biomarker detection.
Pan S, Zhang H, Rush J, Eng J, Zhang N, Patterson D, Comb MJ, Aebersold R. Pan S, et al. Among authors: aebersold r. Mol Cell Proteomics. 2005 Feb;4(2):182-90. doi: 10.1074/mcp.M400161-MCP200. Epub 2005 Jan 5. Mol Cell Proteomics. 2005. PMID: 15637048 Free article.
Integration with the human genome of peptide sequences obtained by high-throughput mass spectrometry.
Desiere F, Deutsch EW, Nesvizhskii AI, Mallick P, King NL, Eng JK, Aderem A, Boyle R, Brunner E, Donohoe S, Fausto N, Hafen E, Hood L, Katze MG, Kennedy KA, Kregenow F, Lee H, Lin B, Martin D, Ranish JA, Rawlings DJ, Samelson LE, Shiio Y, Watts JD, Wollscheid B, Wright ME, Yan W, Yang L, Yi EC, Zhang H, Aebersold R. Desiere F, et al. Among authors: aebersold r. Genome Biol. 2005;6(1):R9. doi: 10.1186/gb-2004-6-1-r9. Epub 2004 Dec 10. Genome Biol. 2005. PMID: 15642101 Free PMC article.
Scoring proteomes with proteotypic peptide probes.
Kuster B, Schirle M, Mallick P, Aebersold R. Kuster B, et al. Among authors: aebersold r. Nat Rev Mol Cell Biol. 2005 Jul;6(7):577-83. doi: 10.1038/nrm1683. Nat Rev Mol Cell Biol. 2005. PMID: 15957003 Review.
Signal maps for mass spectrometry-based comparative proteomics.
Prakash A, Mallick P, Whiteaker J, Zhang H, Paulovich A, Flory M, Lee H, Aebersold R, Schwikowski B. Prakash A, et al. Among authors: aebersold r. Mol Cell Proteomics. 2006 Mar;5(3):423-32. doi: 10.1074/mcp.M500133-MCP200. Epub 2005 Nov 3. Mol Cell Proteomics. 2006. PMID: 16269421 Free article.
897 results