Stark A - Search Results

1

Transcriptional plasticity promotes primary and acquired resistance to BET inhibition.

Rathert P, Roth M, Neumann T, Muerdter F, Roe JS, Muhar M, Deswal S, Cerny-Reiterer S, Peter B, Jude J, Hoffmann T, Boryń ŁM, Axelsson E, Schweifer N, Tontsch-Grunt U, Dow LE, Gianni D, Pearson M, Valent P, Stark A, Kraut N, Vakoc CR, Zuber J. Rathert P, et al. Among authors: stark a. Nature. 2015 Sep 24;525(7570):543-547. doi: 10.1038/nature14898. Epub 2015 Sep 14. Nature. 2015. PMID: 26367798 Free PMC article.

2

Histone modifications at human enhancers reflect global cell-type-specific gene expression.

Heintzman ND, Hon GC, Hawkins RD, Kheradpour P, Stark A, Harp LF, Ye Z, Lee LK, Stuart RK, Ching CW, Ching KA, Antosiewicz-Bourget JE, Liu H, Zhang X, Green RD, Lobanenkov VV, Stewart R, Thomson JA, Crawford GE, Kellis M, Ren B. Heintzman ND, et al. Among authors: stark a. Nature. 2009 May 7;459(7243):108-12. doi: 10.1038/nature07829. Epub 2009 Mar 18. Nature. 2009. PMID: 19295514 Free PMC article.

3

Learning the transcriptional regulatory code.

Stark A. Stark A. Mol Syst Biol. 2009;5:329. doi: 10.1038/msb.2009.88. Epub 2009 Nov 17. Mol Syst Biol. 2009. PMID: 19920814 Free PMC article. No abstract available.

4

A computational pipeline for comparative ChIP-seq analyses.

Bardet AF, He Q, Zeitlinger J, Stark A. Bardet AF, et al. Among authors: stark a. Nat Protoc. 2011 Dec 15;7(1):45-61. doi: 10.1038/nprot.2011.420. Nat Protoc. 2011. PMID: 22179591

5

Genome-wide quantitative enhancer activity maps identified by STARR-seq.

Arnold CD, Gerlach D, Stelzer C, Boryń ŁM, Rath M, Stark A. Arnold CD, et al. Among authors: stark a. Science. 2013 Mar 1;339(6123):1074-7. doi: 10.1126/science.1232542. Epub 2013 Jan 17. Science. 2013. PMID: 23328393

6

Transcriptional enhancers: from properties to genome-wide predictions.

Shlyueva D, Stampfel G, Stark A. Shlyueva D, et al. Among authors: stark a. Nat Rev Genet. 2014 Apr;15(4):272-86. doi: 10.1038/nrg3682. Epub 2014 Mar 11. Nat Rev Genet. 2014. PMID: 24614317 Review.

7

Hormone-responsive enhancer-activity maps reveal predictive motifs, indirect repression, and targeting of closed chromatin.

Shlyueva D, Stelzer C, Gerlach D, Yáñez-Cuna JO, Rath M, Boryń ŁM, Arnold CD, Stark A. Shlyueva D, et al. Among authors: stark a. Mol Cell. 2014 Apr 10;54(1):180-192. doi: 10.1016/j.molcel.2014.02.026. Epub 2014 Mar 27. Mol Cell. 2014. PMID: 24685159 Free article.

8

Dissection of thousands of cell type-specific enhancers identifies dinucleotide repeat motifs as general enhancer features.

Yáñez-Cuna JO, Arnold CD, Stampfel G, Boryń LM, Gerlach D, Rath M, Stark A. Yáñez-Cuna JO, et al. Among authors: stark a. Genome Res. 2014 Jul;24(7):1147-56. doi: 10.1101/gr.169243.113. Epub 2014 Apr 8. Genome Res. 2014. PMID: 24714811 Free PMC article.

9

Genome-scale functional characterization of Drosophila developmental enhancers in vivo.

Kvon EZ, Kazmar T, Stampfel G, Yáñez-Cuna JO, Pagani M, Schernhuber K, Dickson BJ, Stark A. Kvon EZ, et al. Among authors: stark a. Nature. 2014 Aug 7;512(7512):91-5. doi: 10.1038/nature13395. Epub 2014 Jun 1. Nature. 2014. PMID: 24896182

10

Quantitative genome-wide enhancer activity maps for five Drosophila species show functional enhancer conservation and turnover during cis-regulatory evolution.

Arnold CD, Gerlach D, Spies D, Matts JA, Sytnikova YA, Pagani M, Lau NC, Stark A. Arnold CD, et al. Among authors: stark a. Nat Genet. 2014 Jul;46(7):685-92. doi: 10.1038/ng.3009. Epub 2014 Jun 8. Nat Genet. 2014. PMID: 24908250 Free PMC article.

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