Bushman FD - Search Results

1

Inflammation, Antibiotics, and Diet as Environmental Stressors of the Gut Microbiome in Pediatric Crohn's Disease.

Lewis JD, Chen EZ, Baldassano RN, Otley AR, Griffiths AM, Lee D, Bittinger K, Bailey A, Friedman ES, Hoffmann C, Albenberg L, Sinha R, Compher C, Gilroy E, Nessel L, Grant A, Chehoud C, Li H, Wu GD, Bushman FD. Lewis JD, et al. Among authors: bushman fd. Cell Host Microbe. 2015 Oct 14;18(4):489-500. doi: 10.1016/j.chom.2015.09.008. Cell Host Microbe. 2015. PMID: 26468751 Free PMC article.

2

Genome-wide analysis of retroviral DNA integration.

Bushman F, Lewinski M, Ciuffi A, Barr S, Leipzig J, Hannenhalli S, Hoffmann C. Bushman F, et al. Nat Rev Microbiol. 2005 Nov;3(11):848-58. doi: 10.1038/nrmicro1263. Nat Rev Microbiol. 2005. PMID: 16175173 Review.

3

Integration site selection by HIV-based vectors in dividing and growth-arrested IMR-90 lung fibroblasts.

Ciuffi A, Mitchell RS, Hoffmann C, Leipzig J, Shinn P, Ecker JR, Bushman FD. Ciuffi A, et al. Among authors: bushman fd. Mol Ther. 2006 Feb;13(2):366-73. doi: 10.1016/j.ymthe.2005.10.009. Epub 2005 Dec 1. Mol Ther. 2006. PMID: 16325473 Free article.

4

DNA bar coding and pyrosequencing to identify rare HIV drug resistance mutations.

Hoffmann C, Minkah N, Leipzig J, Wang G, Arens MQ, Tebas P, Bushman FD. Hoffmann C, et al. Among authors: bushman fd. Nucleic Acids Res. 2007;35(13):e91. doi: 10.1093/nar/gkm435. Epub 2007 Jun 18. Nucleic Acids Res. 2007. PMID: 17576693 Free PMC article.

5

The macaque gut microbiome in health, lentiviral infection, and chronic enterocolitis.

McKenna P, Hoffmann C, Minkah N, Aye PP, Lackner A, Liu Z, Lozupone CA, Hamady M, Knight R, Bushman FD. McKenna P, et al. Among authors: bushman fd. PLoS Pathog. 2008 Feb 8;4(2):e20. doi: 10.1371/journal.ppat.0040020. PLoS Pathog. 2008. PMID: 18248093 Free PMC article.

6

Massively parallel pyrosequencing in HIV research.

Bushman FD, Hoffmann C, Ronen K, Malani N, Minkah N, Rose HM, Tebas P, Wang GP. Bushman FD, et al. AIDS. 2008 Jul 31;22(12):1411-5. doi: 10.1097/QAD.0b013e3282fc972e. AIDS. 2008. PMID: 18614863 Free PMC article. Review.

7

Community-wide response of the gut microbiota to enteropathogenic Citrobacter rodentium infection revealed by deep sequencing.

Hoffmann C, Hill DA, Minkah N, Kirn T, Troy A, Artis D, Bushman F. Hoffmann C, et al. Infect Immun. 2009 Oct;77(10):4668-78. doi: 10.1128/IAI.00493-09. Epub 2009 Jul 27. Infect Immun. 2009. PMID: 19635824 Free PMC article.

8

High-fat diet determines the composition of the murine gut microbiome independently of obesity.

Hildebrandt MA, Hoffmann C, Sherrill-Mix SA, Keilbaugh SA, Hamady M, Chen YY, Knight R, Ahima RS, Bushman F, Wu GD. Hildebrandt MA, et al. Gastroenterology. 2009 Nov;137(5):1716-24.e1-2. doi: 10.1053/j.gastro.2009.08.042. Epub 2009 Aug 23. Gastroenterology. 2009. PMID: 19706296 Free PMC article.

9

Metagenomic analyses reveal antibiotic-induced temporal and spatial changes in intestinal microbiota with associated alterations in immune cell homeostasis.

Hill DA, Hoffmann C, Abt MC, Du Y, Kobuley D, Kirn TJ, Bushman FD, Artis D. Hill DA, et al. Among authors: bushman fd. Mucosal Immunol. 2010 Mar;3(2):148-58. doi: 10.1038/mi.2009.132. Epub 2009 Nov 25. Mucosal Immunol. 2010. PMID: 19940845 Free PMC article.

10

Sampling and pyrosequencing methods for characterizing bacterial communities in the human gut using 16S sequence tags.

Wu GD, Lewis JD, Hoffmann C, Chen YY, Knight R, Bittinger K, Hwang J, Chen J, Berkowsky R, Nessel L, Li H, Bushman FD. Wu GD, et al. Among authors: bushman fd. BMC Microbiol. 2010 Jul 30;10:206. doi: 10.1186/1471-2180-10-206. BMC Microbiol. 2010. PMID: 20673359 Free PMC article.

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