Ward HN - Search Results

1

NINJA-OPS: Fast Accurate Marker Gene Alignment Using Concatenated Ribosomes.

Al-Ghalith GA, Montassier E, Ward HN, Knights D. Al-Ghalith GA, et al. Among authors: ward hn. PLoS Comput Biol. 2016 Jan 28;12(1):e1004658. doi: 10.1371/journal.pcbi.1004658. eCollection 2016 Jan. PLoS Comput Biol. 2016. PMID: 26820746 Free PMC article.

2

Using BEAN-counter to quantify genetic interactions from multiplexed barcode sequencing experiments.

Simpkins SW, Deshpande R, Nelson J, Li SC, Piotrowski JS, Ward HN, Yashiroda Y, Osada H, Yoshida M, Boone C, Myers CL. Simpkins SW, et al. Among authors: ward hn. Nat Protoc. 2019 Feb;14(2):415-440. doi: 10.1038/s41596-018-0099-1. Nat Protoc. 2019. PMID: 30635653 Free PMC article.

3

MaGIC: a machine learning tool set and web application for monoallelic gene inference from chromatin.

Vinogradova S, Saksena SD, Ward HN, Vigneau S, Gimelbrant AA. Vinogradova S, et al. Among authors: ward hn. BMC Bioinformatics. 2019 Feb 28;20(1):106. doi: 10.1186/s12859-019-2679-7. BMC Bioinformatics. 2019. PMID: 30819107 Free PMC article.

4

A method for benchmarking genetic screens reveals a predominant mitochondrial bias.

Rahman M, Billmann M, Costanzo M, Aregger M, Tong AHY, Chan K, Ward HN, Brown KR, Andrews BJ, Boone C, Moffat J, Myers CL. Rahman M, et al. Among authors: ward hn. Mol Syst Biol. 2021 May;17(5):e10013. doi: 10.15252/msb.202010013. Mol Syst Biol. 2021. PMID: 34018332 Free PMC article.

5

RNF4 and USP7 cooperate in ubiquitin-regulated steps of DNA replication.

Chang YC, Lin K, Baxley RM, Durrett W, Wang L, Stojkova O, Billmann M, Ward H, Myers CL, Bielinsky AK. Chang YC, et al. Open Biol. 2023 Aug;13(8):230068. doi: 10.1098/rsob.230068. Epub 2023 Aug 23. Open Biol. 2023. PMID: 37607592 Free PMC article.

6

Dimensionality reduction methods for extracting functional networks from large-scale CRISPR screens.

Hassan AZ, Ward HN, Rahman M, Billmann M, Lee Y, Myers CL. Hassan AZ, et al. Among authors: ward hn. Mol Syst Biol. 2023 Nov 9;19(11):e11657. doi: 10.15252/msb.202311657. Epub 2023 Sep 26. Mol Syst Biol. 2023. PMID: 37750448 Free PMC article.

7

Dimensionality reduction methods for extracting functional networks from large-scale CRISPR screens.

Zernab Hassan A, Ward HN, Rahman M, Billmann M, Lee Y, Myers CL. Zernab Hassan A, et al. Among authors: ward hn. bioRxiv [Preprint]. 2023 Mar 19:2023.02.22.529573. doi: 10.1101/2023.02.22.529573. bioRxiv. 2023. PMID: 36993440 Free PMC article. Updated. Preprint.

8

Genetic interaction mapping and exon-resolution functional genomics with a hybrid Cas9-Cas12a platform.

Gonatopoulos-Pournatzis T, Aregger M, Brown KR, Farhangmehr S, Braunschweig U, Ward HN, Ha KCH, Weiss A, Billmann M, Durbic T, Myers CL, Blencowe BJ, Moffat J. Gonatopoulos-Pournatzis T, et al. Among authors: ward hn. Nat Biotechnol. 2020 May;38(5):638-648. doi: 10.1038/s41587-020-0437-z. Epub 2020 Mar 16. Nat Biotechnol. 2020. PMID: 32249828

9

Analysis of combinatorial CRISPR screens with the Orthrus scoring pipeline.

Ward HN, Aregger M, Gonatopoulos-Pournatzis T, Billmann M, Ohsumi TK, Brown KR, Blencowe BJ, Moffat J, Myers CL. Ward HN, et al. Nat Protoc. 2021 Oct;16(10):4766-4798. doi: 10.1038/s41596-021-00596-0. Epub 2021 Sep 10. Nat Protoc. 2021. PMID: 34508259 Free PMC article. Review.

10

Reproducibility metrics for context-specific CRISPR screens.

Billmann M, Ward HN, Aregger M, Costanzo M, Andrews BJ, Boone C, Moffat J, Myers CL. Billmann M, et al. Among authors: ward hn. Cell Syst. 2023 May 17;14(5):418-422.e2. doi: 10.1016/j.cels.2023.04.003. Cell Syst. 2023. PMID: 37201508 Free PMC article.

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