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Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment.
Lensink MF, Velankar S, Kryshtafovych A, Huang SY, Schneidman-Duhovny D, Sali A, Segura J, Fernandez-Fuentes N, Viswanath S, Elber R, Grudinin S, Popov P, Neveu E, Lee H, Baek M, Park S, Heo L, Rie Lee G, Seok C, Qin S, Zhou HX, Ritchie DW, Maigret B, Devignes MD, Ghoorah A, Torchala M, Chaleil RA, Bates PA, Ben-Zeev E, Eisenstein M, Negi SS, Weng Z, Vreven T, Pierce BG, Borrman TM, Yu J, Ochsenbein F, Guerois R, Vangone A, Rodrigues JP, van Zundert G, Nellen M, Xue L, Karaca E, Melquiond AS, Visscher K, Kastritis PL, Bonvin AM, Xu X, Qiu L, Yan C, Li J, Ma Z, Cheng J, Zou X, Shen Y, Peterson LX, Kim HR, Roy A, Han X, Esquivel-Rodriguez J, Kihara D, Yu X, Bruce NJ, Fuller JC, Wade RC, Anishchenko I, Kundrotas PJ, Vakser IA, Imai K, Yamada K, Oda T, Nakamura T, Tomii K, Pallara C, Romero-Durana M, Jiménez-García B, Moal IH, Férnandez-Recio J, Joung JY, Kim JY, Joo K, Lee J, Kozakov D, Vajda S, Mottarella S, Hall DR, Beglov D, Mamonov A, Xia B, Bohnuud T, Del Carpio CA, Ichiishi E, Marze N, Kuroda D, Roy Burman SS, Gray JJ, Chermak E, Cavallo L, Oliva R, Tovchigrechko A, Wodak SJ. Lensink MF, et al. Among authors: anishchenko i. Proteins. 2016 Sep;84 Suppl 1(Suppl Suppl 1):323-48. doi: 10.1002/prot.25007. Epub 2016 Jun 1. Proteins. 2016. PMID: 27122118 Free PMC article.
Protein models: the Grand Challenge of protein docking.
Anishchenko I, Kundrotas PJ, Tuzikov AV, Vakser IA. Anishchenko I, et al. Proteins. 2014 Feb;82(2):278-87. doi: 10.1002/prot.24385. Epub 2013 Oct 17. Proteins. 2014. PMID: 23934791 Free PMC article.
Structural templates for comparative protein docking.
Anishchenko I, Kundrotas PJ, Tuzikov AV, Vakser IA. Anishchenko I, et al. Proteins. 2015 Sep;83(9):1563-70. doi: 10.1002/prot.24736. Epub 2015 Jun 13. Proteins. 2015. PMID: 25488330 Free PMC article.
Protein models docking benchmark 2.
Anishchenko I, Kundrotas PJ, Tuzikov AV, Vakser IA. Anishchenko I, et al. Proteins. 2015 May;83(5):891-7. doi: 10.1002/prot.24784. Epub 2015 Mar 25. Proteins. 2015. PMID: 25712716 Free PMC article.
Modeling complexes of modeled proteins.
Anishchenko I, Kundrotas PJ, Vakser IA. Anishchenko I, et al. Proteins. 2017 Mar;85(3):470-478. doi: 10.1002/prot.25183. Epub 2016 Oct 24. Proteins. 2017. PMID: 27701777 Free PMC article.
Dockground: A comprehensive data resource for modeling of protein complexes.
Kundrotas PJ, Anishchenko I, Dauzhenka T, Kotthoff I, Mnevets D, Copeland MM, Vakser IA. Kundrotas PJ, et al. Among authors: anishchenko i. Protein Sci. 2018 Jan;27(1):172-181. doi: 10.1002/pro.3295. Epub 2017 Oct 10. Protein Sci. 2018. PMID: 28891124 Free PMC article.
62 results