Skip to main page content
U.S. flag

An official website of the United States government

Dot gov

The .gov means it’s official.
Federal government websites often end in .gov or .mil. Before sharing sensitive information, make sure you’re on a federal government site.

Https

The site is secure.
The https:// ensures that you are connecting to the official website and that any information you provide is encrypted and transmitted securely.

Access keys NCBI Homepage MyNCBI Homepage Main Content Main Navigation

Search Page

Filters

My NCBI Filters

Text availability

Article attribute

Article type

Publication date

Search Results

10 results

Filters applied: . Clear all
Results are displayed in a computed author sort order. The Results By Year timeline is not available.
Page 1
Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment.
Lensink MF, Velankar S, Kryshtafovych A, Huang SY, Schneidman-Duhovny D, Sali A, Segura J, Fernandez-Fuentes N, Viswanath S, Elber R, Grudinin S, Popov P, Neveu E, Lee H, Baek M, Park S, Heo L, Rie Lee G, Seok C, Qin S, Zhou HX, Ritchie DW, Maigret B, Devignes MD, Ghoorah A, Torchala M, Chaleil RA, Bates PA, Ben-Zeev E, Eisenstein M, Negi SS, Weng Z, Vreven T, Pierce BG, Borrman TM, Yu J, Ochsenbein F, Guerois R, Vangone A, Rodrigues JP, van Zundert G, Nellen M, Xue L, Karaca E, Melquiond AS, Visscher K, Kastritis PL, Bonvin AM, Xu X, Qiu L, Yan C, Li J, Ma Z, Cheng J, Zou X, Shen Y, Peterson LX, Kim HR, Roy A, Han X, Esquivel-Rodriguez J, Kihara D, Yu X, Bruce NJ, Fuller JC, Wade RC, Anishchenko I, Kundrotas PJ, Vakser IA, Imai K, Yamada K, Oda T, Nakamura T, Tomii K, Pallara C, Romero-Durana M, Jiménez-García B, Moal IH, Férnandez-Recio J, Joung JY, Kim JY, Joo K, Lee J, Kozakov D, Vajda S, Mottarella S, Hall DR, Beglov D, Mamonov A, Xia B, Bohnuud T, Del Carpio CA, Ichiishi E, Marze N, Kuroda D, Roy Burman SS, Gray JJ, Chermak E, Cavallo L, Oliva R, Tovchigrechko A, Wodak SJ. Lensink MF, et al. Among authors: mottarella s. Proteins. 2016 Sep;84 Suppl 1(Suppl Suppl 1):323-48. doi: 10.1002/prot.25007. Epub 2016 Jun 1. Proteins. 2016. PMID: 27122118 Free PMC article.
How good is automated protein docking?
Kozakov D, Beglov D, Bohnuud T, Mottarella SE, Xia B, Hall DR, Vajda S. Kozakov D, et al. Among authors: mottarella se. Proteins. 2013 Dec;81(12):2159-66. doi: 10.1002/prot.24403. Epub 2013 Oct 17. Proteins. 2013. PMID: 23996272 Free PMC article.
New additions to the ClusPro server motivated by CAPRI.
Vajda S, Yueh C, Beglov D, Bohnuud T, Mottarella SE, Xia B, Hall DR, Kozakov D. Vajda S, et al. Among authors: mottarella se. Proteins. 2017 Mar;85(3):435-444. doi: 10.1002/prot.25219. Epub 2017 Jan 5. Proteins. 2017. PMID: 27936493 Free PMC article.
Protein-protein docking by fast generalized Fourier transforms on 5D rotational manifolds.
Padhorny D, Kazennov A, Zerbe BS, Porter KA, Xia B, Mottarella SE, Kholodov Y, Ritchie DW, Vajda S, Kozakov D. Padhorny D, et al. Among authors: mottarella se. Proc Natl Acad Sci U S A. 2016 Jul 26;113(30):E4286-93. doi: 10.1073/pnas.1603929113. Epub 2016 Jul 13. Proc Natl Acad Sci U S A. 2016. PMID: 27412858 Free PMC article.
FTMAP: extended protein mapping with user-selected probe molecules.
Ngan CH, Bohnuud T, Mottarella SE, Beglov D, Villar EA, Hall DR, Kozakov D, Vajda S. Ngan CH, et al. Among authors: mottarella se. Nucleic Acids Res. 2012 Jul;40(Web Server issue):W271-5. doi: 10.1093/nar/gks441. Epub 2012 May 15. Nucleic Acids Res. 2012. PMID: 22589414 Free PMC article.
Energy Minimization on Manifolds for Docking Flexible Molecules.
Mirzaei H, Zarbafian S, Villar E, Mottarella S, Beglov D, Vajda S, Paschalidis ICh, Vakili P, Kozakov D. Mirzaei H, et al. Among authors: mottarella s. J Chem Theory Comput. 2015 Mar 10;11(3):1063-76. doi: 10.1021/ct500155t. J Chem Theory Comput. 2015. PMID: 26478722 Free PMC article.
Flexible Refinement of Protein-Ligand Docking on Manifolds.
Mirzaei H, Villar E, Mottarella S, Beglov D, Paschalidis IC, Vajda S, Kozakov D, Vakili P. Mirzaei H, et al. Among authors: mottarella s. Proc IEEE Conf Decis Control. 2013:1392-1397. doi: 10.1109/CDC.2013.6760077. Proc IEEE Conf Decis Control. 2013. PMID: 24830567 Free PMC article.
Conscript: RasMol to PyMOL script converter.
Mottarella SE, Rosa M, Bangura A, Bernstein HJ, Craig PA. Mottarella SE, et al. Biochem Mol Biol Educ. 2010 Nov;38(6):419-22. doi: 10.1002/bmb.20450. Biochem Mol Biol Educ. 2010. PMID: 21567873 Free PMC article.