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Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment.
Proteins. 2016 Sep;84 Suppl 1(Suppl Suppl 1):323-48. doi: 10.1002/prot.25007. Epub 2016 Jun 1.
Proteins. 2016.
PMID: 27122118
Free PMC article.
Assessment of protein side-chain conformation prediction methods in different residue environments.
Peterson LX, Kang X, Kihara D.
Peterson LX, et al.
Proteins. 2014 Sep;82(9):1971-84. doi: 10.1002/prot.24552. Epub 2014 Mar 31.
Proteins. 2014.
PMID: 24619909
Free PMC article.
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Human and server docking prediction for CAPRI round 30-35 using LZerD with combined scoring functions.
Peterson LX, Kim H, Esquivel-Rodriguez J, Roy A, Han X, Shin WH, Zhang J, Terashi G, Lee M, Kihara D.
Peterson LX, et al.
Proteins. 2017 Mar;85(3):513-527. doi: 10.1002/prot.25165. Epub 2016 Oct 14.
Proteins. 2017.
PMID: 27654025
Free PMC article.
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Improved performance in CAPRI round 37 using LZerD docking and template-based modeling with combined scoring functions.
Peterson LX, Shin WH, Kim H, Kihara D.
Peterson LX, et al.
Proteins. 2018 Mar;86 Suppl 1(Suppl 1):311-320. doi: 10.1002/prot.25376. Epub 2017 Sep 11.
Proteins. 2018.
PMID: 28845596
Free PMC article.
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Performance and enhancement of the LZerD protein assembly pipeline in CAPRI 38-46.
Christoffer C, Terashi G, Shin WH, Aderinwale T, Maddhuri Venkata Subramaniya SR, Peterson L, Verburgt J, Kihara D.
Christoffer C, et al.
Proteins. 2020 Aug;88(8):948-961. doi: 10.1002/prot.25850. Epub 2019 Nov 25.
Proteins. 2020.
PMID: 31697428
Free PMC article.
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Modeling disordered protein interactions from biophysical principles.
Peterson LX, Roy A, Christoffer C, Terashi G, Kihara D.
Peterson LX, et al.
PLoS Comput Biol. 2017 Apr 10;13(4):e1005485. doi: 10.1371/journal.pcbi.1005485. eCollection 2017 Apr.
PLoS Comput Biol. 2017.
PMID: 28394890
Free PMC article.
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Modeling the assembly order of multimeric heteroprotein complexes.
Peterson LX, Togawa Y, Esquivel-Rodriguez J, Terashi G, Christoffer C, Roy A, Shin WH, Kihara D.
Peterson LX, et al.
PLoS Comput Biol. 2018 Jan 12;14(1):e1005937. doi: 10.1371/journal.pcbi.1005937. eCollection 2018 Jan.
PLoS Comput Biol. 2018.
PMID: 29329283
Free PMC article.
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Predicting Real-Valued Protein Residue Fluctuation Using FlexPred.
Peterson L, Jamroz M, Kolinski A, Kihara D.
Peterson L, et al.
Methods Mol Biol. 2017;1484:175-186. doi: 10.1007/978-1-4939-6406-2_13.
Methods Mol Biol. 2017.
PMID: 27787827
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