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An updated human snoRNAome.
Jorjani H, Kehr S, Jedlinski DJ, Gumienny R, Hertel J, Stadler PF, Zavolan M, Gruber AR. Jorjani H, et al. Among authors: stadler pf. Nucleic Acids Res. 2016 Jun 20;44(11):5068-82. doi: 10.1093/nar/gkw386. Epub 2016 May 12. Nucleic Acids Res. 2016. PMID: 27174936 Free PMC article.
The expansion of the metazoan microRNA repertoire.
Hertel J, Lindemeyer M, Missal K, Fried C, Tanzer A, Flamm C, Hofacker IL, Stadler PF; Students of Bioinformatics Computer Labs 2004 and 2005. Hertel J, et al. Among authors: stadler pf. BMC Genomics. 2006 Feb 15;7:25. doi: 10.1186/1471-2164-7-25. BMC Genomics. 2006. PMID: 16480513 Free PMC article.
RNAs everywhere: genome-wide annotation of structured RNAs.
Athanasius F Bompfünewerer Consortium; Backofen R, Bernhart SH, Flamm C, Fried C, Fritzsch G, Hackermüller J, Hertel J, Hofacker IL, Missal K, Mosig A, Prohaska SJ, Rose D, Stadler PF, Tanzer A, Washietl S, Will S. Athanasius F Bompfünewerer Consortium, et al. Among authors: stadler pf. J Exp Zool B Mol Dev Evol. 2007 Jan 15;308(1):1-25. doi: 10.1002/jez.b.21130. J Exp Zool B Mol Dev Evol. 2007. PMID: 17171697 Review.
RNA maps reveal new RNA classes and a possible function for pervasive transcription.
Kapranov P, Cheng J, Dike S, Nix DA, Duttagupta R, Willingham AT, Stadler PF, Hertel J, Hackermüller J, Hofacker IL, Bell I, Cheung E, Drenkow J, Dumais E, Patel S, Helt G, Ganesh M, Ghosh S, Piccolboni A, Sementchenko V, Tammana H, Gingeras TR. Kapranov P, et al. Among authors: stadler pf. Science. 2007 Jun 8;316(5830):1484-8. doi: 10.1126/science.1138341. Epub 2007 May 17. Science. 2007. PMID: 17510325
Structured RNAs in the ENCODE selected regions of the human genome.
Washietl S, Pedersen JS, Korbel JO, Stocsits C, Gruber AR, Hackermüller J, Hertel J, Lindemeyer M, Reiche K, Tanzer A, Ucla C, Wyss C, Antonarakis SE, Denoeud F, Lagarde J, Drenkow J, Kapranov P, Gingeras TR, Guigó R, Snyder M, Gerstein MB, Reymond A, Hofacker IL, Stadler PF. Washietl S, et al. Among authors: stadler pf. Genome Res. 2007 Jun;17(6):852-64. doi: 10.1101/gr.5650707. Genome Res. 2007. PMID: 17568003 Free PMC article.
Variations on RNA folding and alignment: lessons from Benasque.
Bompfünewerer AF, Backofen R, Bernhart SH, Hertel J, Hofacker IL, Stadler PF, Will S. Bompfünewerer AF, et al. Among authors: stadler pf. J Math Biol. 2008 Jan;56(1-2):129-44. doi: 10.1007/s00285-007-0107-5. Epub 2007 Jul 5. J Math Biol. 2008. PMID: 17611759
Computational RNomics of drosophilids.
Rose D, Hackermüller J, Washietl S, Reiche K, Hertel J, Findeiss S, Stadler PF, Prohaska SJ. Rose D, et al. Among authors: stadler pf. BMC Genomics. 2007 Nov 8;8:406. doi: 10.1186/1471-2164-8-406. BMC Genomics. 2007. PMID: 17996037 Free PMC article.
Invertebrate 7SK snRNAs.
Gruber AR, Koper-Emde D, Marz M, Tafer H, Bernhart S, Obernosterer G, Mosig A, Hofacker IL, Stadler PF, Benecke BJ. Gruber AR, et al. Among authors: stadler pf. J Mol Evol. 2008 Feb;66(2):107-15. doi: 10.1007/s00239-007-9052-6. Epub 2008 Jan 12. J Mol Evol. 2008. PMID: 18193315 Free PMC article.
595 results