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Partial sequencing reveals the transposable element composition of Coffea genomes and provides evidence for distinct evolutionary stories.
Mol Genet Genomics. 2016 Oct;291(5):1979-90. doi: 10.1007/s00438-016-1235-7. Epub 2016 Jul 28.
Mol Genet Genomics. 2016.
PMID: 27469896
Terminal-repeat retrotransposons with GAG domain in plant genomes: a new testimony on the complex world of transposable elements.
Chaparro C, Gayraud T, de Souza RF, Domingues DS, Akaffou S, Laforga Vanzela AL, Kochko Ad, Rigoreau M, Crouzillat D, Hamon S, Hamon P, Guyot R.
Chaparro C, et al.
Genome Biol Evol. 2015 Jan 7;7(2):493-504. doi: 10.1093/gbe/evv001.
Genome Biol Evol. 2015.
PMID: 25573958
Free PMC article.
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Genotyping-by-sequencing provides the first well-resolved phylogeny for coffee (Coffea) and insights into the evolution of caffeine content in its species: GBS coffee phylogeny and the evolution of caffeine content.
Hamon P, Grover CE, Davis AP, Rakotomalala JJ, Raharimalala NE, Albert VA, Sreenath HL, Stoffelen P, Mitchell SE, Couturon E, Hamon S, de Kochko A, Crouzillat D, Rigoreau M, Sumirat U, Akaffou S, Guyot R.
Hamon P, et al.
Mol Phylogenet Evol. 2017 Apr;109:351-361. doi: 10.1016/j.ympev.2017.02.009. Epub 2017 Feb 16.
Mol Phylogenet Evol. 2017.
PMID: 28212875
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Estimating Sink Parameters of Stochastic Functional-Structural Plant Models Using Organic Series-Continuous and Rhythmic Development.
Kang M, Hua J, Wang X, de Reffye P, Jaeger M, Akaffou S.
Kang M, et al.
Front Plant Sci. 2018 Nov 30;9:1688. doi: 10.3389/fpls.2018.01688. eCollection 2018.
Front Plant Sci. 2018.
PMID: 30555494
Free PMC article.
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