MacLean BX - Search Results

1

Statistical control of peptide and protein error rates in large-scale targeted data-independent acquisition analyses.

Rosenberger G, Bludau I, Schmitt U, Heusel M, Hunter CL, Liu Y, MacCoss MJ, MacLean BX, Nesvizhskii AI, Pedrioli PGA, Reiter L, Röst HL, Tate S, Ting YS, Collins BC, Aebersold R. Rosenberger G, et al. Among authors: maclean bx. Nat Methods. 2017 Sep;14(9):921-927. doi: 10.1038/nmeth.4398. Epub 2017 Aug 21. Nat Methods. 2017. PMID: 28825704 Free PMC article.

2

Expediting the development of targeted SRM assays: using data from shotgun proteomics to automate method development.

Prakash A, Tomazela DM, Frewen B, Maclean B, Merrihew G, Peterman S, Maccoss MJ. Prakash A, et al. J Proteome Res. 2009 Jun;8(6):2733-9. doi: 10.1021/pr801028b. J Proteome Res. 2009. PMID: 19326923 Free PMC article.

3

Comparison of database search strategies for high precursor mass accuracy MS/MS data.

Hsieh EJ, Hoopmann MR, MacLean B, MacCoss MJ. Hsieh EJ, et al. J Proteome Res. 2010 Feb 5;9(2):1138-43. doi: 10.1021/pr900816a. J Proteome Res. 2010. PMID: 19938873 Free PMC article.

4

Skyline: an open source document editor for creating and analyzing targeted proteomics experiments.

MacLean B, Tomazela DM, Shulman N, Chambers M, Finney GL, Frewen B, Kern R, Tabb DL, Liebler DC, MacCoss MJ. MacLean B, et al. Bioinformatics. 2010 Apr 1;26(7):966-8. doi: 10.1093/bioinformatics/btq054. Epub 2010 Feb 9. Bioinformatics. 2010. PMID: 20147306 Free PMC article.

5

Effect of collision energy optimization on the measurement of peptides by selected reaction monitoring (SRM) mass spectrometry.

Maclean B, Tomazela DM, Abbatiello SE, Zhang S, Whiteaker JR, Paulovich AG, Carr SA, Maccoss MJ. Maclean B, et al. Anal Chem. 2010 Dec 15;82(24):10116-24. doi: 10.1021/ac102179j. Epub 2010 Nov 19. Anal Chem. 2010. PMID: 21090646 Free PMC article.

6

Rapid empirical discovery of optimal peptides for targeted proteomics.

Stergachis AB, MacLean B, Lee K, Stamatoyannopoulos JA, MacCoss MJ. Stergachis AB, et al. Nat Methods. 2011 Nov 6;8(12):1041-3. doi: 10.1038/nmeth.1770. Nat Methods. 2011. PMID: 22056677 Free PMC article.

7

Platform-independent and label-free quantitation of proteomic data using MS1 extracted ion chromatograms in skyline: application to protein acetylation and phosphorylation.

Schilling B, Rardin MJ, MacLean BX, Zawadzka AM, Frewen BE, Cusack MP, Sorensen DJ, Bereman MS, Jing E, Wu CC, Verdin E, Kahn CR, Maccoss MJ, Gibson BW. Schilling B, et al. Among authors: maclean bx. Mol Cell Proteomics. 2012 May;11(5):202-14. doi: 10.1074/mcp.M112.017707. Epub 2012 Mar 26. Mol Cell Proteomics. 2012. PMID: 22454539 Free PMC article.

8

Label-free quantitation of protein modifications by pseudo selected reaction monitoring with internal reference peptides.

Sherrod SD, Myers MV, Li M, Myers JS, Carpenter KL, Maclean B, Maccoss MJ, Liebler DC, Ham AJ. Sherrod SD, et al. J Proteome Res. 2012 Jun 1;11(6):3467-79. doi: 10.1021/pr201240a. Epub 2012 May 17. J Proteome Res. 2012. PMID: 22559222 Free PMC article.

9

Using iRT, a normalized retention time for more targeted measurement of peptides.

Escher C, Reiter L, MacLean B, Ossola R, Herzog F, Chilton J, MacCoss MJ, Rinner O. Escher C, et al. Proteomics. 2012 Apr;12(8):1111-21. doi: 10.1002/pmic.201100463. Proteomics. 2012. PMID: 22577012 Free PMC article.

10

The development of selected reaction monitoring methods for targeted proteomics via empirical refinement.

Bereman MS, MacLean B, Tomazela DM, Liebler DC, MacCoss MJ. Bereman MS, et al. Proteomics. 2012 Apr;12(8):1134-41. doi: 10.1002/pmic.201200042. Proteomics. 2012. PMID: 22577014 Free PMC article. Review.

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