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Statistical control of peptide and protein error rates in large-scale targeted data-independent acquisition analyses.
Rosenberger G, Bludau I, Schmitt U, Heusel M, Hunter CL, Liu Y, MacCoss MJ, MacLean BX, Nesvizhskii AI, Pedrioli PGA, Reiter L, Röst HL, Tate S, Ting YS, Collins BC, Aebersold R. Rosenberger G, et al. Among authors: nesvizhskii ai. Nat Methods. 2017 Sep;14(9):921-927. doi: 10.1038/nmeth.4398. Epub 2017 Aug 21. Nat Methods. 2017. PMID: 28825704 Free PMC article.
The application of new software tools to quantitative protein profiling via isotope-coded affinity tag (ICAT) and tandem mass spectrometry: I. Statistically annotated datasets for peptide sequences and proteins identified via the application of ICAT and tandem mass spectrometry to proteins copurifying with T cell lipid rafts.
von Haller PD, Yi E, Donohoe S, Vaughn K, Keller A, Nesvizhskii AI, Eng J, Li XJ, Goodlett DR, Aebersold R, Watts JD. von Haller PD, et al. Among authors: nesvizhskii ai. Mol Cell Proteomics. 2003 Jul;2(7):426-7. doi: 10.1074/mcp.D300002-MCP200. Epub 2003 Jun 25. Mol Cell Proteomics. 2003. PMID: 12832456 Free article.
The application of new software tools to quantitative protein profiling via isotope-coded affinity tag (ICAT) and tandem mass spectrometry: II. Evaluation of tandem mass spectrometry methodologies for large-scale protein analysis, and the application of statistical tools for data analysis and interpretation.
von Haller PD, Yi E, Donohoe S, Vaughn K, Keller A, Nesvizhskii AI, Eng J, Li XJ, Goodlett DR, Aebersold R, Watts JD. von Haller PD, et al. Among authors: nesvizhskii ai. Mol Cell Proteomics. 2003 Jul;2(7):428-42. doi: 10.1074/mcp.M300041-MCP200. Epub 2003 Jun 25. Mol Cell Proteomics. 2003. PMID: 12832459 Free article.
Lipid raft proteins and their identification in T lymphocytes.
Wollscheid B, von Haller PD, Yi E, Donohoe S, Vaughn K, Keller A, Nesvizhskii AI, Eng J, Li XJ, Goodlett DR, Aebersold R, Watts JD. Wollscheid B, et al. Among authors: nesvizhskii ai. Subcell Biochem. 2004;37:121-52. doi: 10.1007/978-1-4757-5806-1_3. Subcell Biochem. 2004. PMID: 15376619 Review.
Quantitative mass spectrometry reveals a role for the GTPase Rho1p in actin organization on the peroxisome membrane.
Marelli M, Smith JJ, Jung S, Yi E, Nesvizhskii AI, Christmas RH, Saleem RA, Tam YY, Fagarasanu A, Goodlett DR, Aebersold R, Rachubinski RA, Aitchison JD. Marelli M, et al. Among authors: nesvizhskii ai. J Cell Biol. 2004 Dec 20;167(6):1099-112. doi: 10.1083/jcb.200404119. Epub 2004 Dec 13. J Cell Biol. 2004. PMID: 15596542 Free PMC article.
Integration with the human genome of peptide sequences obtained by high-throughput mass spectrometry.
Desiere F, Deutsch EW, Nesvizhskii AI, Mallick P, King NL, Eng JK, Aderem A, Boyle R, Brunner E, Donohoe S, Fausto N, Hafen E, Hood L, Katze MG, Kennedy KA, Kregenow F, Lee H, Lin B, Martin D, Ranish JA, Rawlings DJ, Samelson LE, Shiio Y, Watts JD, Wollscheid B, Wright ME, Yan W, Yang L, Yi EC, Zhang H, Aebersold R. Desiere F, et al. Among authors: nesvizhskii ai. Genome Biol. 2005;6(1):R9. doi: 10.1186/gb-2004-6-1-r9. Epub 2004 Dec 10. Genome Biol. 2005. PMID: 15642101 Free PMC article.
230 results