Gregory BD - Search Results

1

Publisher Correction: Dysregulation of the epigenetic landscape of normal aging in Alzheimer's disease.

Nativio R, Donahue G, Berson A, Lan Y, Amlie-Wolf A, Tuzer F, Toledo JB, Gosai SJ, Gregory BD, Torres C, Trojanowski JQ, Wang LS, Johnson FB, Bonini NM, Berger SL. Nativio R, et al. Among authors: gregory bd. Nat Neurosci. 2018 Jul;21(7):1018. doi: 10.1038/s41593-018-0124-2. Nat Neurosci. 2018. PMID: 29556027

2

Genome-wide double-stranded RNA sequencing reveals the functional significance of base-paired RNAs in Arabidopsis.

Zheng Q, Ryvkin P, Li F, Dragomir I, Valladares O, Yang J, Cao K, Wang LS, Gregory BD. Zheng Q, et al. Among authors: gregory bd. PLoS Genet. 2010 Sep 30;6(9):e1001141. doi: 10.1371/journal.pgen.1001141. PLoS Genet. 2010. PMID: 20941385 Free PMC article.

3

SAVoR: a server for sequencing annotation and visualization of RNA structures.

Li F, Ryvkin P, Childress DM, Valladares O, Gregory BD, Wang LS. Li F, et al. Among authors: gregory bd. Nucleic Acids Res. 2012 Jul;40(Web Server issue):W59-64. doi: 10.1093/nar/gks310. Epub 2012 Apr 6. Nucleic Acids Res. 2012. PMID: 22492627 Free PMC article.

4

High-throughput identification of long-range regulatory elements and their target promoters in the human genome.

Hwang YC, Zheng Q, Gregory BD, Wang LS. Hwang YC, et al. Among authors: gregory bd. Nucleic Acids Res. 2013 May;41(9):4835-46. doi: 10.1093/nar/gkt188. Epub 2013 Mar 21. Nucleic Acids Res. 2013. PMID: 23525463 Free PMC article.

5

CoRAL: predicting non-coding RNAs from small RNA-sequencing data.

Leung YY, Ryvkin P, Ungar LH, Gregory BD, Wang LS. Leung YY, et al. Among authors: gregory bd. Nucleic Acids Res. 2013 Aug;41(14):e137. doi: 10.1093/nar/gkt426. Epub 2013 May 21. Nucleic Acids Res. 2013. PMID: 23700308 Free PMC article.

6

Lamin B1 depletion in senescent cells triggers large-scale changes in gene expression and the chromatin landscape.

Shah PP, Donahue G, Otte GL, Capell BC, Nelson DM, Cao K, Aggarwala V, Cruickshanks HA, Rai TS, McBryan T, Gregory BD, Adams PD, Berger SL. Shah PP, et al. Among authors: gregory bd. Genes Dev. 2013 Aug 15;27(16):1787-99. doi: 10.1101/gad.223834.113. Epub 2013 Aug 9. Genes Dev. 2013. PMID: 23934658 Free PMC article.

7

Using machine learning and high-throughput RNA sequencing to classify the precursors of small non-coding RNAs.

Ryvkin P, Leung YY, Ungar LH, Gregory BD, Wang LS. Ryvkin P, et al. Among authors: gregory bd. Methods. 2014 May 1;67(1):28-35. doi: 10.1016/j.ymeth.2013.10.002. Epub 2013 Oct 18. Methods. 2014. PMID: 24145223 Free PMC article.

8

Tissue-specific RNA-Seq in human evoked inflammation identifies blood and adipose LincRNA signatures of cardiometabolic diseases.

Liu Y, Ferguson JF, Xue C, Ballantyne RL, Silverman IM, Gosai SJ, Serfecz J, Morley MP, Gregory BD, Li M, Reilly MP. Liu Y, et al. Among authors: gregory bd. Arterioscler Thromb Vasc Biol. 2014 Apr;34(4):902-12. doi: 10.1161/ATVBAHA.113.303123. Epub 2014 Feb 6. Arterioscler Thromb Vasc Biol. 2014. PMID: 24504737 Free PMC article.

9

Inactivation of yeast Isw2 chromatin remodeling enzyme mimics longevity effect of calorie restriction via induction of genotoxic stress response.

Dang W, Sutphin GL, Dorsey JA, Otte GL, Cao K, Perry RM, Wanat JJ, Saviolaki D, Murakami CJ, Tsuchiyama S, Robison B, Gregory BD, Vermeulen M, Shiekhattar R, Johnson FB, Kennedy BK, Kaeberlein M, Berger SL. Dang W, et al. Among authors: gregory bd. Cell Metab. 2014 Jun 3;19(6):952-66. doi: 10.1016/j.cmet.2014.04.004. Epub 2014 May 8. Cell Metab. 2014. PMID: 24814484 Free PMC article.

10

HIPPIE: a high-throughput identification pipeline for promoter interacting enhancer elements.

Hwang YC, Lin CF, Valladares O, Malamon J, Kuksa PP, Zheng Q, Gregory BD, Wang LS. Hwang YC, et al. Among authors: gregory bd. Bioinformatics. 2015 Apr 15;31(8):1290-2. doi: 10.1093/bioinformatics/btu801. Epub 2014 Dec 4. Bioinformatics. 2015. PMID: 25480377 Free PMC article.

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