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Scalable Design of Paired CRISPR Guide RNAs for Genomic Deletion.
Pulido-Quetglas C, Aparicio-Prat E, Arnan C, Polidori T, Hermoso T, Palumbo E, Ponomarenko J, Guigo R, Johnson R. Pulido-Quetglas C, et al. Among authors: johnson r. PLoS Comput Biol. 2017 Mar 2;13(3):e1005341. doi: 10.1371/journal.pcbi.1005341. eCollection 2017 Mar. PLoS Comput Biol. 2017. PMID: 28253259 Free PMC article.
Capturing a Long Look at Our Genetic Library.
Lagarde J, Johnson R. Lagarde J, et al. Among authors: johnson r. Cell Syst. 2018 Feb 28;6(2):153-155. doi: 10.1016/j.cels.2018.02.003. Cell Syst. 2018. PMID: 29494803 Free article.
Towards a complete map of the human long non-coding RNA transcriptome.
Uszczynska-Ratajczak B, Lagarde J, Frankish A, Guigó R, Johnson R. Uszczynska-Ratajczak B, et al. Among authors: johnson r. Nat Rev Genet. 2018 Sep;19(9):535-548. doi: 10.1038/s41576-018-0017-y. Nat Rev Genet. 2018. PMID: 29795125 Free PMC article. Review.
LnCompare: gene set feature analysis for human long non-coding RNAs.
Carlevaro-Fita J, Liu L, Zhou Y, Zhang S, Chouvardas P, Johnson R, Li J. Carlevaro-Fita J, et al. Among authors: johnson r. Nucleic Acids Res. 2019 Jul 2;47(W1):W523-W529. doi: 10.1093/nar/gkz410. Nucleic Acids Res. 2019. PMID: 31147707 Free PMC article.
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