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CARNA--alignment of RNA structure ensembles.
Sorescu DA, Möhl M, Mann M, Backofen R, Will S. Sorescu DA, et al. Among authors: backofen r. Nucleic Acids Res. 2012 Jul;40(Web Server issue):W49-53. doi: 10.1093/nar/gks491. Epub 2012 Jun 11. Nucleic Acids Res. 2012. PMID: 22689637 Free PMC article.
RC3H1 post-transcriptionally regulates A20 mRNA and modulates the activity of the IKK/NF-κB pathway.
Murakawa Y, Hinz M, Mothes J, Schuetz A, Uhl M, Wyler E, Yasuda T, Mastrobuoni G, Friedel CC, Dölken L, Kempa S, Schmidt-Supprian M, Blüthgen N, Backofen R, Heinemann U, Wolf J, Scheidereit C, Landthaler M. Murakawa Y, et al. Among authors: backofen r. Nat Commun. 2015 Jul 14;6:7367. doi: 10.1038/ncomms8367. Nat Commun. 2015. PMID: 26170170 Free PMC article.
The lncRNA landscape of breast cancer reveals a role for DSCAM-AS1 in breast cancer progression.
Niknafs YS, Han S, Ma T, Speers C, Zhang C, Wilder-Romans K, Iyer MK, Pitchiaya S, Malik R, Hosono Y, Prensner JR, Poliakov A, Singhal U, Xiao L, Kregel S, Siebenaler RF, Zhao SG, Uhl M, Gawronski A, Hayes DF, Pierce LJ, Cao X, Collins C, Backofen R, Sahinalp CS, Rae JM, Chinnaiyan AM, Feng FY. Niknafs YS, et al. Among authors: backofen r. Nat Commun. 2016 Sep 26;7:12791. doi: 10.1038/ncomms12791. Nat Commun. 2016. PMID: 27666543 Free PMC article.
Mechanism of β-actin mRNA Recognition by ZBP1.
Nicastro G, Candel AM, Uhl M, Oregioni A, Hollingworth D, Backofen R, Martin SR, Ramos A. Nicastro G, et al. Among authors: backofen r. Cell Rep. 2017 Jan 31;18(5):1187-1199. doi: 10.1016/j.celrep.2016.12.091. Cell Rep. 2017. PMID: 28147274 Free PMC article.
Computational analysis of CLIP-seq data.
Uhl M, Houwaart T, Corrado G, Wright PR, Backofen R. Uhl M, et al. Among authors: backofen r. Methods. 2017 Apr 15;118-119:60-72. doi: 10.1016/j.ymeth.2017.02.006. Epub 2017 Feb 22. Methods. 2017. PMID: 28254606 Review.
258 results