Oudelaar AM - Search Results

1

DeepC: predicting 3D genome folding using megabase-scale transfer learning.

Schwessinger R, Gosden M, Downes D, Brown RC, Oudelaar AM, Telenius J, Teh YW, Lunter G, Hughes JR. Schwessinger R, et al. Among authors: oudelaar am. Nat Methods. 2020 Nov;17(11):1118-1124. doi: 10.1038/s41592-020-0960-3. Epub 2020 Oct 12. Nat Methods. 2020. PMID: 33046896 Free PMC article.

2

The role of loop extrusion in enhancer-mediated gene activation.

Karpinska MA, Oudelaar AM. Karpinska MA, et al. Among authors: oudelaar am. Curr Opin Genet Dev. 2023 Apr;79:102022. doi: 10.1016/j.gde.2023.102022. Epub 2023 Feb 24. Curr Opin Genet Dev. 2023. PMID: 36842325 Free article. Review.

3

How best to identify chromosomal interactions: a comparison of approaches.

Davies JO, Oudelaar AM, Higgs DR, Hughes JR. Davies JO, et al. Among authors: oudelaar am. Nat Methods. 2017 Jan 31;14(2):125-134. doi: 10.1038/nmeth.4146. Nat Methods. 2017. PMID: 28139673 Review.

4

Tissue-specific CTCF-cohesin-mediated chromatin architecture delimits enhancer interactions and function in vivo.

Hanssen LLP, Kassouf MT, Oudelaar AM, Biggs D, Preece C, Downes DJ, Gosden M, Sharpe JA, Sloane-Stanley JA, Hughes JR, Davies B, Higgs DR. Hanssen LLP, et al. Among authors: oudelaar am. Nat Cell Biol. 2017 Aug;19(8):952-961. doi: 10.1038/ncb3573. Epub 2017 Jul 24. Nat Cell Biol. 2017. PMID: 28737770 Free PMC article.

5

Between form and function: the complexity of genome folding.

Oudelaar AM, Hanssen LLP, Hardison RC, Kassouf MT, Hughes JR, Higgs DR. Oudelaar AM, et al. Hum Mol Genet. 2017 Oct 1;26(R2):R208-R215. doi: 10.1093/hmg/ddx306. Hum Mol Genet. 2017. PMID: 28977451 Free PMC article. Review.

6

Robust detection of chromosomal interactions from small numbers of cells using low-input Capture-C.

Oudelaar AM, Davies JOJ, Downes DJ, Higgs DR, Hughes JR. Oudelaar AM, et al. Nucleic Acids Res. 2017 Dec 15;45(22):e184. doi: 10.1093/nar/gkx1194. Nucleic Acids Res. 2017. PMID: 29186505 Free PMC article.

7

Low-input Capture-C: A Chromosome Conformation Capture Assay to Analyze Chromatin Architecture in Small Numbers of Cells.

Oudelaar AM, Downes DJ, Davies JOJ, Hughes JR. Oudelaar AM, et al. Bio Protoc. 2017 Dec 5;7(23):e2645. doi: 10.21769/BioProtoc.2645. Bio Protoc. 2017. PMID: 29270442 Free PMC article.

8

A tissue-specific self-interacting chromatin domain forms independently of enhancer-promoter interactions.

Brown JM, Roberts NA, Graham B, Waithe D, Lagerholm C, Telenius JM, De Ornellas S, Oudelaar AM, Scott C, Szczerbal I, Babbs C, Kassouf MT, Hughes JR, Higgs DR, Buckle VJ. Brown JM, et al. Among authors: oudelaar am. Nat Commun. 2018 Sep 21;9(1):3849. doi: 10.1038/s41467-018-06248-4. Nat Commun. 2018. PMID: 30242161 Free PMC article.

9

Single-allele chromatin interactions identify regulatory hubs in dynamic compartmentalized domains.

Oudelaar AM, Davies JOJ, Hanssen LLP, Telenius JM, Schwessinger R, Liu Y, Brown JM, Downes DJ, Chiariello AM, Bianco S, Nicodemi M, Buckle VJ, Dekker J, Higgs DR, Hughes JR. Oudelaar AM, et al. Nat Genet. 2018 Dec;50(12):1744-1751. doi: 10.1038/s41588-018-0253-2. Epub 2018 Oct 29. Nat Genet. 2018. PMID: 30374068 Free PMC article.

10

DOT1L inhibition reveals a distinct subset of enhancers dependent on H3K79 methylation.

Godfrey L, Crump NT, Thorne R, Lau IJ, Repapi E, Dimou D, Smith AL, Harman JR, Telenius JM, Oudelaar AM, Downes DJ, Vyas P, Hughes JR, Milne TA. Godfrey L, et al. Among authors: oudelaar am. Nat Commun. 2019 Jun 26;10(1):2803. doi: 10.1038/s41467-019-10844-3. Nat Commun. 2019. PMID: 31243293 Free PMC article.

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