Califano A - Search Results

1

SECAT: Quantifying Protein Complex Dynamics across Cell States by Network-Centric Analysis of SEC-SWATH-MS Profiles.

Rosenberger G, Heusel M, Bludau I, Collins BC, Martelli C, Williams EG, Xue P, Liu Y, Aebersold R, Califano A. Rosenberger G, et al. Among authors: califano a. Cell Syst. 2020 Dec 16;11(6):589-607.e8. doi: 10.1016/j.cels.2020.11.006. Cell Syst. 2020. PMID: 33333029 Free PMC article.

2

Reverse-engineering human regulatory networks.

Lefebvre C, Rieckhof G, Califano A. Lefebvre C, et al. Among authors: califano a. Wiley Interdiscip Rev Syst Biol Med. 2012 Jul-Aug;4(4):311-25. doi: 10.1002/wsbm.1159. Epub 2012 Jan 13. Wiley Interdiscip Rev Syst Biol Med. 2012. PMID: 22246697 Free PMC article. Review.

3

Elucidating Compound Mechanism of Action by Network Perturbation Analysis.

Woo JH, Shimoni Y, Yang WS, Subramaniam P, Iyer A, Nicoletti P, Rodríguez Martínez M, López G, Mattioli M, Realubit R, Karan C, Stockwell BR, Bansal M, Califano A. Woo JH, et al. Among authors: califano a. Cell. 2015 Jul 16;162(2):441-451. doi: 10.1016/j.cell.2015.05.056. Cell. 2015. PMID: 26186195 Free PMC article.

4

Elucidating synergistic dependencies in lung adenocarcinoma by proteome-wide signaling-network analysis.

Bansal M, He J, Peyton M, Kustagi M, Iyer A, Comb M, White M, Minna JD, Califano A. Bansal M, et al. Among authors: califano a. PLoS One. 2019 Jan 7;14(1):e0208646. doi: 10.1371/journal.pone.0208646. eCollection 2019. PLoS One. 2019. PMID: 30615629 Free PMC article.

5

Network-based elucidation of colon cancer drug resistance by phosphoproteomic time-series analysis.

Rosenberger G, Li W, Turunen M, He J, Subramaniam PS, Pampou S, Griffin AT, Karan C, Kerwin P, Murray D, Honig B, Liu Y, Califano A. Rosenberger G, et al. Among authors: califano a. bioRxiv [Preprint]. 2023 Feb 16:2023.02.15.528736. doi: 10.1101/2023.02.15.528736. bioRxiv. 2023. PMID: 36824919 Free PMC article. Updated. Preprint.

6

Network-based elucidation of colon cancer drug resistance mechanisms by phosphoproteomic time-series analysis.

Rosenberger G, Li W, Turunen M, He J, Subramaniam PS, Pampou S, Griffin AT, Karan C, Kerwin P, Murray D, Honig B, Liu Y, Califano A. Rosenberger G, et al. Among authors: califano a. Nat Commun. 2024 May 9;15(1):3909. doi: 10.1038/s41467-024-47957-3. Nat Commun. 2024. PMID: 38724493 Free PMC article.

7

Structure-based prediction of protein-protein interactions on a genome-wide scale.

Zhang QC, Petrey D, Deng L, Qiang L, Shi Y, Thu CA, Bisikirska B, Lefebvre C, Accili D, Hunter T, Maniatis T, Califano A, Honig B. Zhang QC, et al. Among authors: califano a. Nature. 2012 Oct 25;490(7421):556-60. doi: 10.1038/nature11503. Epub 2012 Sep 30. Nature. 2012. PMID: 23023127 Free PMC article.

8

Identification of causal genetic drivers of human disease through systems-level analysis of regulatory networks.

Chen JC, Alvarez MJ, Talos F, Dhruv H, Rieckhof GE, Iyer A, Diefes KL, Aldape K, Berens M, Shen MM, Califano A. Chen JC, et al. Among authors: califano a. Cell. 2014 Oct 9;159(2):402-14. doi: 10.1016/j.cell.2014.09.021. Cell. 2014. PMID: 25303533 Free PMC article.

9

Functional characterization of somatic mutations in cancer using network-based inference of protein activity.

Alvarez MJ, Shen Y, Giorgi FM, Lachmann A, Ding BB, Ye BH, Califano A. Alvarez MJ, et al. Among authors: califano a. Nat Genet. 2016 Aug;48(8):838-47. doi: 10.1038/ng.3593. Epub 2016 Jun 20. Nat Genet. 2016. PMID: 27322546 Free PMC article.

10

Accelerated parallel algorithm for gene network reverse engineering.

He J, Zhou Z, Reed M, Califano A. He J, et al. Among authors: califano a. BMC Syst Biol. 2017 Sep 21;11(Suppl 4):83. doi: 10.1186/s12918-017-0458-5. BMC Syst Biol. 2017. PMID: 28950860 Free PMC article.

Save citations to file

Email citations

Send citations to clipboard

Add to Collections

Add to My Bibliography

Create a file for external citation management software

Your saved search

Your RSS Feed

My NCBI Filters

Text availability

Article attribute

Article type

Publication date

345 results

Search Page