Kaplan T - Search Results

1

ChIP-seq of plasma cell-free nucleosomes identifies gene expression programs of the cells of origin.

Sadeh R, Sharkia I, Fialkoff G, Rahat A, Gutin J, Chappleboim A, Nitzan M, Fox-Fisher I, Neiman D, Meler G, Kamari Z, Yaish D, Peretz T, Hubert A, Cohen JE, Salah A, Temper M, Grinshpun A, Maoz M, Abu-Gazala S, Ben Ya'acov A, Shteyer E, Safadi R, Kaplan T, Shemer R, Planer D, Galun E, Glaser B, Zick A, Dor Y, Friedman N. Sadeh R, et al. Among authors: kaplan t. Nat Biotechnol. 2021 May;39(5):586-598. doi: 10.1038/s41587-020-00775-6. Epub 2021 Jan 11. Nat Biotechnol. 2021. PMID: 33432199 Free PMC article.

2

CIS: compound importance sampling method for protein-DNA binding site p-value estimation.

Barash Y, Elidan G, Kaplan T, Friedman N. Barash Y, et al. Among authors: kaplan t. Bioinformatics. 2005 Mar 1;21(5):596-600. doi: 10.1093/bioinformatics/bti041. Epub 2004 Sep 28. Bioinformatics. 2005. PMID: 15454407

3

Ab initio prediction of transcription factor targets using structural knowledge.

Kaplan T, Friedman N, Margalit H. Kaplan T, et al. PLoS Comput Biol. 2005 Jun;1(1):e1. doi: 10.1371/journal.pcbi.0010001. Epub 2005 Jun 24. PLoS Comput Biol. 2005. PMID: 16103898 Free PMC article.

4

Single-nucleosome mapping of histone modifications in S. cerevisiae.

Liu CL, Kaplan T, Kim M, Buratowski S, Schreiber SL, Friedman N, Rando OJ. Liu CL, et al. Among authors: kaplan t. PLoS Biol. 2005 Oct;3(10):e328. doi: 10.1371/journal.pbio.0030328. Epub 2005 Aug 30. PLoS Biol. 2005. PMID: 16122352 Free PMC article.

5

Dynamics of replication-independent histone turnover in budding yeast.

Dion MF, Kaplan T, Kim M, Buratowski S, Friedman N, Rando OJ. Dion MF, et al. Among authors: kaplan t. Science. 2007 Mar 9;315(5817):1405-8. doi: 10.1126/science.1134053. Science. 2007. PMID: 17347438

6

A novel Bayesian DNA motif comparison method for clustering and retrieval.

Habib N, Kaplan T, Margalit H, Friedman N. Habib N, et al. Among authors: kaplan t. PLoS Comput Biol. 2008 Feb 29;4(2):e1000010. doi: 10.1371/journal.pcbi.1000010. PLoS Comput Biol. 2008. PMID: 18463706 Free PMC article.

7

Nucleosome positioning from tiling microarray data.

Yassour M, Kaplan T, Jaimovich A, Friedman N. Yassour M, et al. Among authors: kaplan t. Bioinformatics. 2008 Jul 1;24(13):i139-46. doi: 10.1093/bioinformatics/btn151. Bioinformatics. 2008. PMID: 18586706 Free PMC article.

8

Structure and function of a transcriptional network activated by the MAPK Hog1.

Capaldi AP, Kaplan T, Liu Y, Habib N, Regev A, Friedman N, O'Shea EK. Capaldi AP, et al. Among authors: kaplan t. Nat Genet. 2008 Nov;40(11):1300-6. doi: 10.1038/ng.235. Epub 2008 Oct 19. Nat Genet. 2008. PMID: 18931682 Free PMC article.

9

Cell cycle- and chaperone-mediated regulation of H3K56ac incorporation in yeast.

Kaplan T, Liu CL, Erkmann JA, Holik J, Grunstein M, Kaufman PD, Friedman N, Rando OJ. Kaplan T, et al. PLoS Genet. 2008 Nov;4(11):e1000270. doi: 10.1371/journal.pgen.1000270. Epub 2008 Nov 21. PLoS Genet. 2008. PMID: 19023413 Free PMC article.

10

Gene expression: Running to stand still.

Kaplan T, Friedman N. Kaplan T, et al. Nature. 2012 Apr 11;484(7393):171-2. doi: 10.1038/484171a. Nature. 2012. PMID: 22498619 No abstract available.

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