Fossati A - Search Results

1

Mapping specificity, cleavage entropy, allosteric changes and substrates of blood proteases in a high-throughput screen.

Uliana F, Vizovišek M, Acquasaliente L, Ciuffa R, Fossati A, Frommelt F, Goetze S, Wollscheid B, Gstaiger M, De Filippis V, Auf dem Keller U, Aebersold R. Uliana F, et al. Among authors: fossati a. Nat Commun. 2021 Mar 16;12(1):1693. doi: 10.1038/s41467-021-21754-8. Nat Commun. 2021. PMID: 33727531 Free PMC article.

2

System-Wide Profiling of Protein Complexes Via Size Exclusion Chromatography-Mass Spectrometry (SEC-MS).

Fossati A, Frommelt F, Uliana F, Martelli C, Vizovisek M, Gillet L, Collins B, Gstaiger M, Aebersold R. Fossati A, et al. Methods Mol Biol. 2021;2259:269-294. doi: 10.1007/978-1-0716-1178-4_18. Methods Mol Biol. 2021. PMID: 33687722

3

PCprophet: a framework for protein complex prediction and differential analysis using proteomic data.

Fossati A, Li C, Uliana F, Wendt F, Frommelt F, Sykacek P, Heusel M, Hallal M, Bludau I, Capraz T, Xue P, Song J, Wollscheid B, Purcell AW, Gstaiger M, Aebersold R. Fossati A, et al. Nat Methods. 2021 May;18(5):520-527. doi: 10.1038/s41592-021-01107-5. Epub 2021 Apr 15. Nat Methods. 2021. PMID: 33859439

4

PCfun: a hybrid computational framework for systematic characterization of protein complex function.

Sharma VS, Fossati A, Ciuffa R, Buljan M, Williams EG, Chen Z, Shao W, Pedrioli PGA, Purcell AW, Martínez MR, Song J, Manica M, Aebersold R, Li C. Sharma VS, et al. Among authors: fossati a. Brief Bioinform. 2022 Jul 18;23(4):bbac239. doi: 10.1093/bib/bbac239. Brief Bioinform. 2022. PMID: 35724564 Free PMC article.

5

Phosphorylation-linked complex profiling identifies assemblies required for Hippo signal integration.

Uliana F, Ciuffa R, Mishra R, Fossati A, Frommelt F, Keller S, Mehnert M, Birkeland ES, van Drogen F, Srejic N, Peter M, Tapon N, Aebersold R, Gstaiger M. Uliana F, et al. Among authors: fossati a. Mol Syst Biol. 2023 Apr 12;19(4):e11024. doi: 10.15252/msb.202211024. Epub 2023 Mar 10. Mol Syst Biol. 2023. PMID: 36896621 Free PMC article.

6

Rapid Profiling of Protein Complex Reorganization in Perturbed Systems.

Bludau I, Nicod C, Martelli C, Xue P, Heusel M, Fossati A, Uliana F, Frommelt F, Aebersold R, Collins BC. Bludau I, et al. Among authors: fossati a. J Proteome Res. 2023 May 5;22(5):1520-1536. doi: 10.1021/acs.jproteome.3c00125. Epub 2023 Apr 14. J Proteome Res. 2023. PMID: 37058003 Free PMC article.

7

Longevity interventions modulate mechanotransduction and extracellular matrix homeostasis in C. elegans.

Teuscher AC, Statzer C, Goyala A, Domenig SA, Schoen I, Hess M, Hofer AM, Fossati A, Vogel V, Goksel O, Aebersold R, Ewald CY. Teuscher AC, et al. Among authors: fossati a. Nat Commun. 2024 Jan 4;15(1):276. doi: 10.1038/s41467-023-44409-2. Nat Commun. 2024. PMID: 38177158 Free PMC article.

8

DIP-MS: ultra-deep interaction proteomics for the deconvolution of protein complexes.

Frommelt F, Fossati A, Uliana F, Wendt F, Xue P, Heusel M, Wollscheid B, Aebersold R, Ciuffa R, Gstaiger M. Frommelt F, et al. Among authors: fossati a. Nat Methods. 2024 Apr;21(4):635-647. doi: 10.1038/s41592-024-02211-y. Epub 2024 Mar 26. Nat Methods. 2024. PMID: 38532014 Free PMC article.

9

Next-generation proteomics for quantitative Jumbophage-bacteria interaction mapping.

Fossati A, Mozumdar D, Kokontis C, Mèndez-Moran M, Nieweglowska E, Pelin A, Li Y, Guo B, Krogan NJ, Agard DA, Bondy-Denomy J, Swaney DL. Fossati A, et al. Nat Commun. 2023 Aug 24;14(1):5156. doi: 10.1038/s41467-023-40724-w. Nat Commun. 2023. PMID: 37620325 Free PMC article.

10

Evolution of enhanced innate immune evasion by SARS-CoV-2.

Thorne LG, Bouhaddou M, Reuschl AK, Zuliani-Alvarez L, Polacco B, Pelin A, Batra J, Whelan MVX, Hosmillo M, Fossati A, Ragazzini R, Jungreis I, Ummadi M, Rojc A, Turner J, Bischof ML, Obernier K, Braberg H, Soucheray M, Richards A, Chen KH, Harjai B, Memon D, Hiatt J, Rosales R, McGovern BL, Jahun A, Fabius JM, White K, Goodfellow IG, Takeuchi Y, Bonfanti P, Shokat K, Jura N, Verba K, Noursadeghi M, Beltrao P, Kellis M, Swaney DL, García-Sastre A, Jolly C, Towers GJ, Krogan NJ. Thorne LG, et al. Among authors: fossati a. Nature. 2022 Feb;602(7897):487-495. doi: 10.1038/s41586-021-04352-y. Epub 2021 Dec 23. Nature. 2022. PMID: 34942634 Free PMC article.

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