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Toxicology knowledge graph for structural birth defects.
Evangelista JE, Clarke DJB, Xie Z, Marino GB, Utti V, Jenkins SL, Ahooyi TM, Bologa CG, Yang JJ, Binder JL, Kumar P, Lambert CG, Grethe JS, Wenger E, Taylor D, Oprea TI, de Bono B, Ma'ayan A. Evangelista JE, et al. Among authors: jenkins sl. Commun Med (Lond). 2023 Jul 17;3(1):98. doi: 10.1038/s43856-023-00329-2. Commun Med (Lond). 2023. PMID: 37460679 Free PMC article.
Getting Started with LINCS Datasets and Tools.
Xie Z, Kropiwnicki E, Wojciechowicz ML, Jagodnik KM, Shu I, Bailey A, Clarke DJB, Jeon M, Evangelista JE, V Kuleshov M, Lachmann A, Parigi AA, Sanchez JM, Jenkins SL, Ma'ayan A. Xie Z, et al. Among authors: jenkins sl. Curr Protoc. 2022 Jul;2(7):e487. doi: 10.1002/cpz1.487. Curr Protoc. 2022. PMID: 35876555 Free PMC article.
SigCom LINCS: data and metadata search engine for a million gene expression signatures.
Evangelista JE, Clarke DJB, Xie Z, Lachmann A, Jeon M, Chen K, Jagodnik KM, Jenkins SL, Kuleshov MV, Wojciechowicz ML, Schürer SC, Medvedovic M, Ma'ayan A. Evangelista JE, et al. Among authors: jenkins sl. Nucleic Acids Res. 2022 Jul 5;50(W1):W697-W709. doi: 10.1093/nar/gkac328. Nucleic Acids Res. 2022. PMID: 35524556 Free PMC article.
Gene and drug landing page aggregator.
Clarke DJB, Kuleshov MV, Xie Z, Evangelista JE, Meyers MR, Kropiwnicki E, Jenkins SL, Ma'ayan A. Clarke DJB, et al. Among authors: jenkins sl. Bioinform Adv. 2022 Feb 28;2(1):vbac013. doi: 10.1093/bioadv/vbac013. eCollection 2022. Bioinform Adv. 2022. PMID: 35368424 Free PMC article.
Gene Set Knowledge Discovery with Enrichr.
Xie Z, Bailey A, Kuleshov MV, Clarke DJB, Evangelista JE, Jenkins SL, Lachmann A, Wojciechowicz ML, Kropiwnicki E, Jagodnik KM, Jeon M, Ma'ayan A. Xie Z, et al. Among authors: jenkins sl. Curr Protoc. 2021 Mar;1(3):e90. doi: 10.1002/cpz1.90. Curr Protoc. 2021. PMID: 33780170 Free PMC article.
Predicting Lyme Disease From Patients' Peripheral Blood Mononuclear Cells Profiled With RNA-Sequencing.
Clarke DJB, Rebman AW, Bailey A, Wojciechowicz ML, Jenkins SL, Evangelista JE, Danieletto M, Fan J, Eshoo MW, Mosel MR, Robinson W, Ramadoss N, Bobe J, Soloski MJ, Aucott JN, Ma'ayan A. Clarke DJB, et al. Among authors: jenkins sl. Front Immunol. 2021 Mar 8;12:636289. doi: 10.3389/fimmu.2021.636289. eCollection 2021. Front Immunol. 2021. PMID: 33763080 Free PMC article.
Appyters: Turning Jupyter Notebooks into data-driven web apps.
Clarke DJB, Jeon M, Stein DJ, Moiseyev N, Kropiwnicki E, Dai C, Xie Z, Wojciechowicz ML, Litz S, Hom J, Evangelista JE, Goldman L, Zhang S, Yoon C, Ahamed T, Bhuiyan S, Cheng M, Karam J, Jagodnik KM, Shu I, Lachmann A, Ayling S, Jenkins SL, Ma'ayan A. Clarke DJB, et al. Among authors: jenkins sl. Patterns (N Y). 2021 Mar 4;2(3):100213. doi: 10.1016/j.patter.2021.100213. eCollection 2021 Mar 12. Patterns (N Y). 2021. PMID: 33748796 Free PMC article.
75 results