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Tracheal aspirate RNA sequencing identifies distinct immunological features of COVID-19 ARDS.
Sarma A, Christenson SA, Byrne A, Mick E, Pisco AO, DeVoe C, Deiss T, Ghale R, Zha BS, Tsitsiklis A, Jauregui A, Moazed F, Detweiler AM, Spottiswoode N, Sinha P, Neff N, Tan M, Serpa PH, Willmore A, Ansel KM, Wilson JG, Leligdowicz A, Siegel ER, Sirota M, DeRisi JL, Matthay MA; COMET Consortium; Hendrickson CM, Kangelaris KN, Krummel MF, Woodruff PG, Erle DJ, Calfee CS, Langelier CR. Sarma A, et al. Among authors: sirota m. Nat Commun. 2021 Aug 26;12(1):5152. doi: 10.1038/s41467-021-25040-5. Nat Commun. 2021. PMID: 34446707 Free PMC article.
Systematic pan-cancer analysis of tumour purity.
Aran D, Sirota M, Butte AJ. Aran D, et al. Among authors: sirota m. Nat Commun. 2015 Dec 4;6:8971. doi: 10.1038/ncomms9971. Nat Commun. 2015. PMID: 26634437 Free PMC article.
Comprehensive analysis of normal adjacent to tumor transcriptomes.
Aran D, Camarda R, Odegaard J, Paik H, Oskotsky B, Krings G, Goga A, Sirota M, Butte AJ. Aran D, et al. Among authors: sirota m. Nat Commun. 2017 Oct 20;8(1):1077. doi: 10.1038/s41467-017-01027-z. Nat Commun. 2017. PMID: 29057876 Free PMC article.
COVID-19 ARDS is characterized by a dysregulated host response that differs from cytokine storm and is modified by dexamethasone.
Sarma A, Christenson SA, Mick E, DeVoe C, Deiss T, Pisco AO, Ghale R, Jauregui A, Byrne A, Moazed F, Spottiswoode N, Sinha P, Zha BS, Neff N, Tan M, Serpa PH, Ansel KM, Wilson JG, Leligdowicz A, Siegel ER, Sirota M, DeRisi JL, Matthay MA; COMET Consortium; Hendrickson CM, Kangelaris KN, Krummel MF, Woodruff PG, Erle DJ, Calfee CS, Langelier CR. Sarma A, et al. Among authors: sirota m. Res Sq [Preprint]. 2021 Jan 14:rs.3.rs-141578. doi: 10.21203/rs.3.rs-141578/v1. Res Sq. 2021. PMID: 33469573 Free PMC article. Updated. Preprint.
Transcriptomic analysis of immune cells in a multi-ethnic cohort of systemic lupus erythematosus patients identifies ethnicity- and disease-specific expression signatures.
Andreoletti G, Lanata CM, Trupin L, Paranjpe I, Jain TS, Nititham J, Taylor KE, Combes AJ, Maliskova L, Ye CJ, Katz P, Dall'Era M, Yazdany J, Criswell LA, Sirota M. Andreoletti G, et al. Among authors: sirota m. Commun Biol. 2021 Apr 21;4(1):488. doi: 10.1038/s42003-021-02000-9. Commun Biol. 2021. PMID: 33883687 Free PMC article.
Sex-Stratified Single-Cell RNA-Seq Analysis Identifies Sex-Specific and Cell Type-Specific Transcriptional Responses in Alzheimer's Disease Across Two Brain Regions.
Belonwu SA, Li Y, Bunis D, Rao AA, Solsberg CW, Tang A, Fragiadakis GK, Dubal DB, Oskotsky T, Sirota M. Belonwu SA, et al. Among authors: sirota m. Mol Neurobiol. 2022 Jan;59(1):276-293. doi: 10.1007/s12035-021-02591-8. Epub 2021 Oct 20. Mol Neurobiol. 2022. PMID: 34669146 Free PMC article.
Pulmonary microbiome and gene expression signatures differentiate lung function in pediatric hematopoietic cell transplant candidates.
Zinter MS, Versluys AB, Lindemans CA, Mayday MY, Reyes G, Sunshine S, Chan M, Fiorino EK, Cancio M, Prevaes S, Sirota M, Matthay MA, Kharbanda S, Dvorak CC, Boelens JJ, DeRisi JL. Zinter MS, et al. Among authors: sirota m. Sci Transl Med. 2022 Mar 9;14(635):eabm8646. doi: 10.1126/scitranslmed.abm8646. Epub 2022 Mar 9. Sci Transl Med. 2022. PMID: 35263147 Free PMC article.
299 results