Hudson CM - Search Results

1

Benchmarking blockchain-based gene-drug interaction data sharing methods: A case study from the iDASH 2019 secure genome analysis competition blockchain track.

Kuo TT, Bath T, Ma S, Pattengale N, Yang M, Cao Y, Hudson CM, Kim J, Post K, Xiong L, Ohno-Machado L. Kuo TT, et al. Among authors: hudson cm. Int J Med Inform. 2021 Oct;154:104559. doi: 10.1016/j.ijmedinf.2021.104559. Epub 2021 Aug 18. Int J Med Inform. 2021. PMID: 34474309 Free PMC article.

2

Decentralized genomics audit logging via permissioned blockchain ledgering.

Pattengale ND, Hudson CM. Pattengale ND, et al. Among authors: hudson cm. BMC Med Genomics. 2020 Jul 21;13(Suppl 7):102. doi: 10.1186/s12920-020-0720-3. BMC Med Genomics. 2020. PMID: 32693795 Free PMC article.

3

Genomic and Synthetic Biology Digital Biosecurity.

Hudson CM, Pattengale ND, Iyer RK, Kalbarczyk ZT, Alli N. Hudson CM, et al. Pac Symp Biocomput. 2022;27:402-406. Pac Symp Biocomput. 2022. PMID: 34890167 Free article.

4

RetSynth: determining all optimal and sub-optimal synthetic pathways that facilitate synthesis of target compounds in chassis organisms.

Whitmore LS, Nguyen B, Pinar A, George A, Hudson CM. Whitmore LS, et al. Among authors: hudson cm. BMC Bioinformatics. 2019 Sep 9;20(1):461. doi: 10.1186/s12859-019-3025-9. BMC Bioinformatics. 2019. PMID: 31500573 Free PMC article.

5

New candidates for regulated gene integrity revealed through precise mapping of integrative genetic elements.

Mageeney CM, Lau BY, Wagner JM, Hudson CM, Schoeniger JS, Krishnakumar R, Williams KP. Mageeney CM, et al. Among authors: hudson cm. Nucleic Acids Res. 2020 May 7;48(8):4052-4065. doi: 10.1093/nar/gkaa156. Nucleic Acids Res. 2020. PMID: 32182341 Free PMC article.

6

Experimental single-strain mobilomics reveals events that shape pathogen emergence.

Schoeniger JS, Hudson CM, Bent ZW, Sinha A, Williams KP. Schoeniger JS, et al. Among authors: hudson cm. Nucleic Acids Res. 2016 Aug 19;44(14):6830-9. doi: 10.1093/nar/gkw601. Epub 2016 Jul 4. Nucleic Acids Res. 2016. PMID: 27378783 Free PMC article.

7

CasCollect: targeted assembly of CRISPR-associated operons from high-throughput sequencing data.

Podlevsky JD, Hudson CM, Timlin JA, Williams KP. Podlevsky JD, et al. Among authors: hudson cm. NAR Genom Bioinform. 2020 Sep 3;2(3):lqaa063. doi: 10.1093/nargab/lqaa063. eCollection 2020 Sep. NAR Genom Bioinform. 2020. PMID: 33575613 Free PMC article.

8

Islander: a database of precisely mapped genomic islands in tRNA and tmRNA genes.

Hudson CM, Lau BY, Williams KP. Hudson CM, et al. Nucleic Acids Res. 2015 Jan;43(Database issue):D48-53. doi: 10.1093/nar/gku1072. Epub 2014 Nov 5. Nucleic Acids Res. 2015. PMID: 25378302 Free PMC article.

9

Defending Our Public Biological Databases as a Global Critical Infrastructure.

Caswell J, Gans JD, Generous N, Hudson CM, Merkley E, Johnson C, Oehmen C, Omberg K, Purvine E, Taylor K, Ting CL, Wolinsky M, Xie G. Caswell J, et al. Among authors: hudson cm. Front Bioeng Biotechnol. 2019 Apr 5;7:58. doi: 10.3389/fbioe.2019.00058. eCollection 2019. Front Bioeng Biotechnol. 2019. PMID: 31024904 Free PMC article.

10

Resistance determinants and mobile genetic elements of an NDM-1-encoding Klebsiella pneumoniae strain.

Hudson CM, Bent ZW, Meagher RJ, Williams KP. Hudson CM, et al. PLoS One. 2014 Jun 6;9(6):e99209. doi: 10.1371/journal.pone.0099209. eCollection 2014. PLoS One. 2014. PMID: 24905728 Free PMC article.

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