Marks DS - Search Results

1

Publisher Correction: Disease variant prediction with deep generative models of evolutionary data.

Frazer J, Notin P, Dias M, Gomez A, Min JK, Brock K, Gal Y, Marks DS. Frazer J, et al. Among authors: marks ds. Nature. 2022 Jan;601(7892):E7. doi: 10.1038/s41586-021-04207-6. Nature. 2022. PMID: 34921310 No abstract available.

2

Structure of the peptidoglycan polymerase RodA resolved by evolutionary coupling analysis.

Sjodt M, Brock K, Dobihal G, Rohs PDA, Green AG, Hopf TA, Meeske AJ, Srisuknimit V, Kahne D, Walker S, Marks DS, Bernhardt TG, Rudner DZ, Kruse AC. Sjodt M, et al. Among authors: marks ds. Nature. 2018 Apr 5;556(7699):118-121. doi: 10.1038/nature25985. Epub 2018 Mar 28. Nature. 2018. PMID: 29590088 Free PMC article.

3

Structure and mutagenic analysis of the lipid II flippase MurJ from Escherichia coli.

Zheng S, Sham LT, Rubino FA, Brock KP, Robins WP, Mekalanos JJ, Marks DS, Bernhardt TG, Kruse AC. Zheng S, et al. Among authors: marks ds. Proc Natl Acad Sci U S A. 2018 Jun 26;115(26):6709-6714. doi: 10.1073/pnas.1802192115. Epub 2018 Jun 11. Proc Natl Acad Sci U S A. 2018. PMID: 29891673 Free PMC article.

4

Deep generative models of genetic variation capture the effects of mutations.

Riesselman AJ, Ingraham JB, Marks DS. Riesselman AJ, et al. Among authors: marks ds. Nat Methods. 2018 Oct;15(10):816-822. doi: 10.1038/s41592-018-0138-4. Epub 2018 Sep 24. Nat Methods. 2018. PMID: 30250057 Free PMC article.

5

The EVcouplings Python framework for coevolutionary sequence analysis.

Hopf TA, Green AG, Schubert B, Mersmann S, Schärfe CPI, Ingraham JB, Toth-Petroczy A, Brock K, Riesselman AJ, Palmedo P, Kang C, Sheridan R, Draizen EJ, Dallago C, Sander C, Marks DS. Hopf TA, et al. Among authors: marks ds. Bioinformatics. 2019 May 1;35(9):1582-1584. doi: 10.1093/bioinformatics/bty862. Bioinformatics. 2019. PMID: 30304492 Free PMC article.

6

Cryo-electron microscopy structure of the lipid droplet-formation protein seipin.

Sui X, Arlt H, Brock KP, Lai ZW, DiMaio F, Marks DS, Liao M, Farese RV Jr, Walther TC. Sui X, et al. Among authors: marks ds. J Cell Biol. 2018 Dec 3;217(12):4080-4091. doi: 10.1083/jcb.201809067. Epub 2018 Oct 16. J Cell Biol. 2018. PMID: 30327422 Free PMC article.

7

Evidence that regulation of intramembrane proteolysis is mediated by substrate gating during sporulation in Bacillus subtilis.

Ramírez-Guadiana FH, Rodrigues CDA, Marquis KA, Campo N, Barajas-Ornelas RDC, Brock K, Marks DS, Kruse AC, Rudner DZ. Ramírez-Guadiana FH, et al. Among authors: marks ds. PLoS Genet. 2018 Nov 7;14(11):e1007753. doi: 10.1371/journal.pgen.1007753. eCollection 2018 Nov. PLoS Genet. 2018. PMID: 30403663 Free PMC article.

8

Combining Evolutionary Covariance and NMR Data for Protein Structure Determination.

Huang YJ, Brock KP, Ishida Y, Swapna GVT, Inouye M, Marks DS, Sander C, Montelione GT. Huang YJ, et al. Among authors: marks ds. Methods Enzymol. 2019;614:363-392. doi: 10.1016/bs.mie.2018.11.004. Epub 2018 Dec 23. Methods Enzymol. 2019. PMID: 30611430 Free PMC article.

9

A Hybrid Approach for Protein Structure Determination Combining Sparse NMR with Evolutionary Coupling Sequence Data.

Huang YJ, Brock KP, Sander C, Marks DS, Montelione GT. Huang YJ, et al. Among authors: marks ds. Adv Exp Med Biol. 2018;1105:153-169. doi: 10.1007/978-981-13-2200-6_10. Adv Exp Med Biol. 2018. PMID: 30617828 Free PMC article. Review.

10

Inferring protein 3D structure from deep mutation scans.

Rollins NJ, Brock KP, Poelwijk FJ, Stiffler MA, Gauthier NP, Sander C, Marks DS. Rollins NJ, et al. Among authors: marks ds. Nat Genet. 2019 Jul;51(7):1170-1176. doi: 10.1038/s41588-019-0432-9. Epub 2019 Jun 17. Nat Genet. 2019. PMID: 31209393 Free PMC article.

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