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Automated analysis of phylogenetic clusters.
Ragonnet-Cronin M, Hodcroft E, Hué S, Fearnhill E, Delpech V, Brown AJ, Lycett S; UK HIV Drug Resistance Database. Ragonnet-Cronin M, et al. BMC Bioinformatics. 2013 Nov 6;14:317. doi: 10.1186/1471-2105-14-317. BMC Bioinformatics. 2013. PMID: 24191891 Free PMC article.
A Direct Comparison of Two Densely Sampled HIV Epidemics: The UK and Switzerland.
Ragonnet-Cronin ML, Shilaih M, Günthard HF, Hodcroft EB, Böni J, Fearnhill E, Dunn D, Yerly S, Klimkait T, Aubert V, Yang WL, Brown AE, Lycett SJ, Kouyos R, Brown AJ. Ragonnet-Cronin ML, et al. Sci Rep. 2016 Sep 19;6:32251. doi: 10.1038/srep32251. Sci Rep. 2016. PMID: 27642070 Free PMC article.
Sequencing identifies multiple early introductions of SARS-CoV-2 to the New York City Region.
Maurano MT, Ramaswami S, Zappile P, Dimartino D, Boytard L, Ribeiro-Dos-Santos AM, Vulpescu NA, Westby G, Shen G, Feng X, Hogan MS, Ragonnet-Cronin M, Geidelberg L, Marier C, Meyn P, Zhang Y, Cadley J, Ordoñez R, Luther R, Huang E, Guzman E, Arguelles-Grande C, Argyropoulos KV, Black M, Serrano A, Call ME, Kim MJ, Belovarac B, Gindin T, Lytle A, Pinnell J, Vougiouklakis T, Chen J, Lin LH, Rapkiewicz A, Raabe V, Samanovic MI, Jour G, Osman I, Aguero-Rosenfeld M, Mulligan MJ, Volz EM, Cotzia P, Snuderl M, Heguy A. Maurano MT, et al. medRxiv [Preprint]. 2020 Aug 19:2020.04.15.20064931. doi: 10.1101/2020.04.15.20064931. medRxiv. 2020. PMID: 32511587 Free PMC article. Updated. Preprint.
SARS-CoV-2 infection prevalence on repatriation flights from Wuhan City, China.
Thompson HA, Imai N, Dighe A, Ainslie KEC, Baguelin M, Bhatia S, Bhatt S, Boonyasiri A, Boyd O, Brazeau NF, Cattarino L, Cooper LV, Coupland H, Cucunuba Z, Cuomo-Dannenburg G, Djaafara B, Dorigatti I, van Elsland S, FitzJohn R, Fu H, Gaythorpe KAM, Green W, Hallett T, Hamlet A, Haw D, Hayes S, Hinsley W, Jeffrey B, Knock E, Laydon DJ, Lees J, Mangal TD, Mellan T, Mishra S, Mousa A, Nedjati-Gilani G, Nouvellet P, Okell L, Parag KV, Ragonnet-Cronin M, Riley S, Unwin HJT, Verity R, Vollmer M, Volz E, Walker PGT, Walters C, Wang H, Wang Y, Watson OJ, Whittaker C, Whittles LK, Winskill P, Xi X, Donnelly CA, Ferguson NM. Thompson HA, et al. J Travel Med. 2020 Dec 23;27(8):taaa135. doi: 10.1093/jtm/taaa135. J Travel Med. 2020. PMID: 32830853 Free PMC article. No abstract available.
66 results