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Spatial components of molecular tissue biology.
Palla G, Fischer DS, Regev A, Theis FJ. Palla G, et al. Among authors: theis fj. Nat Biotechnol. 2022 Mar;40(3):308-318. doi: 10.1038/s41587-021-01182-1. Epub 2022 Feb 7. Nat Biotechnol. 2022. PMID: 35132261 Review.
Lessons learned from quantitative dynamical modeling in systems biology.
Raue A, Schilling M, Bachmann J, Matteson A, Schelker M, Kaschek D, Hug S, Kreutz C, Harms BD, Theis FJ, Klingmüller U, Timmer J. Raue A, et al. Among authors: theis fj. PLoS One. 2013 Sep 30;8(9):e74335. doi: 10.1371/journal.pone.0074335. eCollection 2013. PLoS One. 2013. PMID: 24098642 Free PMC article.
Decoding the regulatory network of early blood development from single-cell gene expression measurements.
Moignard V, Woodhouse S, Haghverdi L, Lilly AJ, Tanaka Y, Wilkinson AC, Buettner F, Macaulay IC, Jawaid W, Diamanti E, Nishikawa SI, Piterman N, Kouskoff V, Theis FJ, Fisher J, Göttgens B. Moignard V, et al. Among authors: theis fj. Nat Biotechnol. 2015 Mar;33(3):269-276. doi: 10.1038/nbt.3154. Epub 2015 Feb 9. Nat Biotechnol. 2015. PMID: 25664528 Free PMC article.
Computational approaches for systems metabolomics.
Krumsiek J, Bartel J, Theis FJ. Krumsiek J, et al. Among authors: theis fj. Curr Opin Biotechnol. 2016 Jun;39:198-206. doi: 10.1016/j.copbio.2016.04.009. Epub 2016 Apr 30. Curr Opin Biotechnol. 2016. PMID: 27135552 Free article. Review.
Software tools for single-cell tracking and quantification of cellular and molecular properties.
Hilsenbeck O, Schwarzfischer M, Skylaki S, Schauberger B, Hoppe PS, Loeffler D, Kokkaliaris KD, Hastreiter S, Skylaki E, Filipczyk A, Strasser M, Buggenthin F, Feigelman JS, Krumsiek J, van den Berg AJ, Endele M, Etzrodt M, Marr C, Theis FJ, Schroeder T. Hilsenbeck O, et al. Among authors: theis fj. Nat Biotechnol. 2016 Jul 12;34(7):703-6. doi: 10.1038/nbt.3626. Nat Biotechnol. 2016. PMID: 27404877 No abstract available.
Diffusion pseudotime robustly reconstructs lineage branching.
Haghverdi L, Büttner M, Wolf FA, Buettner F, Theis FJ. Haghverdi L, et al. Among authors: theis fj. Nat Methods. 2016 Oct;13(10):845-8. doi: 10.1038/nmeth.3971. Epub 2016 Aug 29. Nat Methods. 2016. PMID: 27571553
The Human Cell Atlas.
Regev A, Teichmann SA, Lander ES, Amit I, Benoist C, Birney E, Bodenmiller B, Campbell P, Carninci P, Clatworthy M, Clevers H, Deplancke B, Dunham I, Eberwine J, Eils R, Enard W, Farmer A, Fugger L, Göttgens B, Hacohen N, Haniffa M, Hemberg M, Kim S, Klenerman P, Kriegstein A, Lein E, Linnarsson S, Lundberg E, Lundeberg J, Majumder P, Marioni JC, Merad M, Mhlanga M, Nawijn M, Netea M, Nolan G, Pe'er D, Phillipakis A, Ponting CP, Quake S, Reik W, Rozenblatt-Rosen O, Sanes J, Satija R, Schumacher TN, Shalek A, Shapiro E, Sharma P, Shin JW, Stegle O, Stratton M, Stubbington MJT, Theis FJ, Uhlen M, van Oudenaarden A, Wagner A, Watt F, Weissman J, Wold B, Xavier R, Yosef N; Human Cell Atlas Meeting Participants. Regev A, et al. Among authors: theis fj. Elife. 2017 Dec 5;6:e27041. doi: 10.7554/eLife.27041. Elife. 2017. PMID: 29206104 Free PMC article.
384 results