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Inter-species geographic signatures for tracing horizontal gene transfer and long-term persistence of carbapenem resistance.
Salamzade R, Manson AL, Walker BJ, Brennan-Krohn T, Worby CJ, Ma P, He LL, Shea TP, Qu J, Chapman SB, Howe W, Young SK, Wurster JI, Delaney ML, Kanjilal S, Onderdonk AB, Bittencourt CE, Gussin GM, Kim D, Peterson EM, Ferraro MJ, Hooper DC, Shenoy ES, Cuomo CA, Cosimi LA, Huang SS, Kirby JE, Pierce VM, Bhattacharyya RP, Earl AM. Salamzade R, et al. Genome Med. 2022 Apr 5;14(1):37. doi: 10.1186/s13073-022-01040-y. Genome Med. 2022. PMID: 35379360 Free PMC article.
vRhyme enables binning of viral genomes from metagenomes.
Kieft K, Adams A, Salamzade R, Kalan L, Anantharaman K. Kieft K, et al. Among authors: salamzade r. Nucleic Acids Res. 2022 Aug 12;50(14):e83. doi: 10.1093/nar/gkac341. Nucleic Acids Res. 2022. PMID: 35544285 Free PMC article.
The porcine skin microbiome exhibits broad fungal antagonism.
De La Cruz KF, Townsend EC, Alex Cheong JZ, Salamzade R, Liu A, Sandstrom S, Davila E, Huang L, Xu KH, Wu SY, Meudt JJ, Shanmuganayagam D, Gibson ALF, Kalan LR. De La Cruz KF, et al. Among authors: salamzade r. Fungal Genet Biol. 2024 May 28;173:103898. doi: 10.1016/j.fgb.2024.103898. Online ahead of print. Fungal Genet Biol. 2024. PMID: 38815692 Free article.
Combined metagenomic- and culture-based approaches to investigate bacterial strain-level associations with medication-controlled mild-moderate atopic dermatitis.
Lane Starr NM, Al-Rayyan N, Smith JM, Sandstrom S, Swaney MH, Salamzade R, Steidl O, Kalan LR, Singh AM. Lane Starr NM, et al. Among authors: salamzade r. J Allergy Clin Immunol Glob. 2024 Apr 15;3(3):100259. doi: 10.1016/j.jacig.2024.100259. eCollection 2024 Aug. J Allergy Clin Immunol Glob. 2024. PMID: 38779310 Free PMC article.
Global diversity of enterococci and description of 18 previously unknown species.
Schwartzman JA, Lebreton F, Salamzade R, Shea T, Martin MJ, Schaufler K, Urhan A, Abeel T, Camargo ILBC, Sgardioli BF, Prichula J, Guedes Frazzon AP, Giribet G, Van Tyne D, Treinish G, Innis CJ, Wagenaar JA, Whipple RM, Manson AL, Earl AM, Gilmore MS. Schwartzman JA, et al. Among authors: salamzade r. Proc Natl Acad Sci U S A. 2024 Mar 5;121(10):e2310852121. doi: 10.1073/pnas.2310852121. Epub 2024 Feb 28. Proc Natl Acad Sci U S A. 2024. PMID: 38416678 Free PMC article.
17 results