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Multiomic atlas with functional stratification and developmental dynamics of zebrafish cis-regulatory elements.
Baranasic D, Hörtenhuber M, Balwierz PJ, Zehnder T, Mukarram AK, Nepal C, Várnai C, Hadzhiev Y, Jimenez-Gonzalez A, Li N, Wragg J, D'Orazio FM, Relic D, Pachkov M, Díaz N, Hernández-Rodríguez B, Chen Z, Stoiber M, Dong M, Stevens I, Ross SE, Eagle A, Martin R, Obasaju O, Rastegar S, McGarvey AC, Kopp W, Chambers E, Wang D, Kim HR, Acemel RD, Naranjo S, Łapiński M, Chong V, Mathavan S, Peers B, Sauka-Spengler T, Vingron M, Carninci P, Ohler U, Lacadie SA, Burgess SM, Winata C, van Eeden F, Vaquerizas JM, Gómez-Skarmeta JL, Onichtchouk D, Brown BJ, Bogdanovic O, van Nimwegen E, Westerfield M, Wardle FC, Daub CO, Lenhard B, Müller F. Baranasic D, et al. Among authors: kopp w. Nat Genet. 2022 Jul;54(7):1037-1050. doi: 10.1038/s41588-022-01089-w. Epub 2022 Jul 4. Nat Genet. 2022. PMID: 35789323 Free PMC article.
Esrrb Unlocks Silenced Enhancers for Reprogramming to Naive Pluripotency.
Adachi K, Kopp W, Wu G, Heising S, Greber B, Stehling M, Araúzo-Bravo MJ, Boerno ST, Timmermann B, Vingron M, Schöler HR. Adachi K, et al. Among authors: kopp w. Cell Stem Cell. 2018 Aug 2;23(2):266-275.e6. doi: 10.1016/j.stem.2018.05.020. Epub 2018 Jun 14. Cell Stem Cell. 2018. PMID: 29910149 Free article.
Deep learning for genomics using Janggu.
Kopp W, Monti R, Tamburrini A, Ohler U, Akalin A. Kopp W, et al. Nat Commun. 2020 Jul 13;11(1):3488. doi: 10.1038/s41467-020-17155-y. Nat Commun. 2020. PMID: 32661261 Free PMC article.
Single-cell-resolved dynamics of chromatin architecture delineate cell and regulatory states in zebrafish embryos.
McGarvey AC, Kopp W, Vučićević D, Mattonet K, Kempfer R, Hirsekorn A, Bilić I, Gil M, Trinks A, Merks AM, Panáková D, Pombo A, Akalin A, Junker JP, Stainier DYR, Garfield D, Ohler U, Lacadie SA. McGarvey AC, et al. Among authors: kopp w. Cell Genom. 2022 Jan 13;2(1):100083. doi: 10.1016/j.xgen.2021.100083. eCollection 2022 Jan 12. Cell Genom. 2022. PMID: 36777038 Free PMC article.
Esrrb Unlocks Silenced Enhancers for Reprogramming to Naive Pluripotency.
Adachi K, Kopp W, Wu G, Heising S, Greber B, Stehling M, Araúzo-Bravo MJ, Boerno ST, Timmermann B, Vingron M, Schöler HR. Adachi K, et al. Among authors: kopp w. Cell Stem Cell. 2018 Dec 6;23(6):900-904. doi: 10.1016/j.stem.2018.11.009. Cell Stem Cell. 2018. PMID: 30526884 Free article. No abstract available.
Predicting lethal courses in critically ill COVID-19 patients using a machine learning model trained on patients with non-COVID-19 viral pneumonia.
Lichtner G, Balzer F, Haufe S, Giesa N, Schiefenhövel F, Schmieding M, Jurth C, Kopp W, Akalin A, Schaller SJ, Weber-Carstens S, Spies C, von Dincklage F. Lichtner G, et al. Among authors: kopp w. Sci Rep. 2021 Jun 24;11(1):13205. doi: 10.1038/s41598-021-92475-7. Sci Rep. 2021. PMID: 34168198 Free PMC article.
Crowdsourcing digital health measures to predict Parkinson's disease severity: the Parkinson's Disease Digital Biomarker DREAM Challenge.
Sieberts SK, Schaff J, Duda M, Pataki BÁ, Sun M, Snyder P, Daneault JF, Parisi F, Costante G, Rubin U, Banda P, Chae Y, Chaibub Neto E, Dorsey ER, Aydın Z, Chen A, Elo LL, Espino C, Glaab E, Goan E, Golabchi FN, Görmez Y, Jaakkola MK, Jonnagaddala J, Klén R, Li D, McDaniel C, Perrin D, Perumal TM, Rad NM, Rainaldi E, Sapienza S, Schwab P, Shokhirev N, Venäläinen MS, Vergara-Diaz G, Zhang Y; Parkinson’s Disease Digital Biomarker Challenge Consortium; Wang Y, Guan Y, Brunner D, Bonato P, Mangravite LM, Omberg L. Sieberts SK, et al. NPJ Digit Med. 2021 Mar 19;4(1):53. doi: 10.1038/s41746-021-00414-7. NPJ Digit Med. 2021. PMID: 33742069 Free PMC article.
307 results