Alcaraz N - Search Results

1

Editorial: Computational systems biomedicine.

Batra R, Baloni P, Alcaraz N, Hauschild AC, Cervera A. Batra R, et al. Among authors: alcaraz n. Front Genet. 2022 Oct 12;13:1047760. doi: 10.3389/fgene.2022.1047760. eCollection 2022. Front Genet. 2022. PMID: 36313421 Free PMC article. No abstract available.

2

De Novo Pathway-Based Classification of Breast Cancer Subtypes.

List M, Alcaraz N, Batra R. List M, et al. Among authors: alcaraz n. Methods Mol Biol. 2020;2074:201-213. doi: 10.1007/978-1-4939-9873-9_15. Methods Mol Biol. 2020. PMID: 31583640

3

Genomic Profile in a Non-Seminoma Testicular Germ-Cell Tumor Cohort Reveals a Potential Biomarker of Sensitivity to Platinum-Based Therapy.

González-Barrios R, Alcaraz N, Montalvo-Casimiro M, Cervera A, Arriaga-Canon C, Munguia-Garza P, Hinojosa-Ugarte D, Sobrevilla-Moreno N, Torres-Arciga K, Mendoza-Perez J, Diaz-Chavez J, Cortes-González CC, Castro-Hernández C, Martínez-Cedillo J, Scavuzzo A, Pérez-Montiel D, Jiménez-Ríos MA, Herrera LA. González-Barrios R, et al. Among authors: alcaraz n. Cancers (Basel). 2022 Apr 20;14(9):2065. doi: 10.3390/cancers14092065. Cancers (Basel). 2022. PMID: 35565196 Free PMC article.

4

De novo pathway-based biomarker identification.

Alcaraz N, List M, Batra R, Vandin F, Ditzel HJ, Baumbach J. Alcaraz N, et al. Nucleic Acids Res. 2017 Sep 19;45(16):e151. doi: 10.1093/nar/gkx642. Nucleic Acids Res. 2017. PMID: 28934488 Free PMC article.

5

On the performance of de novo pathway enrichment.

Batra R, Alcaraz N, Gitzhofer K, Pauling J, Ditzel HJ, Hellmuth M, Baumbach J, List M. Batra R, et al. Among authors: alcaraz n. NPJ Syst Biol Appl. 2017 Mar 3;3:6. doi: 10.1038/s41540-017-0007-2. eCollection 2017. NPJ Syst Biol Appl. 2017. PMID: 28649433 Free PMC article.

6

Elucidation of Altered Pathways in Tumor-Initiating Cells of Triple-Negative Breast Cancer: A Useful Cell Model System for Drug Screening.

Christensen AG, Ehmsen S, Terp MG, Batra R, Alcaraz N, Baumbach J, Noer JB, Moreira J, Leth-Larsen R, Larsen MR, Ditzel HJ. Christensen AG, et al. Among authors: alcaraz n. Stem Cells. 2017 Aug;35(8):1898-1912. doi: 10.1002/stem.2654. Epub 2017 Jun 23. Stem Cells. 2017. PMID: 28600813

7

Elucidation of epithelial-mesenchymal transition-related pathways in a triple-negative breast cancer cell line model by multi-omics interactome analysis.

Pauling JK, Christensen AG, Batra R, Alcaraz N, Barbosa E, Larsen MR, Beck HC, Leth-Larsen R, Azevedo V, Ditzel HJ, Baumbach J. Pauling JK, et al. Among authors: alcaraz n. Integr Biol (Camb). 2014 Nov;6(11):1058-68. doi: 10.1039/c4ib00137k. Integr Biol (Camb). 2014. PMID: 25124678

8

KeyPathwayMiner 4.0: condition-specific pathway analysis by combining multiple omics studies and networks with Cytoscape.

Alcaraz N, Pauling J, Batra R, Barbosa E, Junge A, Christensen AG, Azevedo V, Ditzel HJ, Baumbach J. Alcaraz N, et al. BMC Syst Biol. 2014 Aug 19;8:99. doi: 10.1186/s12918-014-0099-x. BMC Syst Biol. 2014. PMID: 25134827 Free PMC article.

9

Endogenous retroviruses co-opted as divergently transcribed regulatory elements shape the regulatory landscape of embryonic stem cells.

Bakoulis S, Krautz R, Alcaraz N, Salvatore M, Andersson R. Bakoulis S, et al. Among authors: alcaraz n. Nucleic Acids Res. 2022 Feb 28;50(4):2111-2127. doi: 10.1093/nar/gkac088. Nucleic Acids Res. 2022. PMID: 35166831 Free PMC article.

10

Promoter sequence and architecture determine expression variability and confer robustness to genetic variants.

Einarsson H, Salvatore M, Vaagensø C, Alcaraz N, Bornholdt J, Rennie S, Andersson R. Einarsson H, et al. Among authors: alcaraz n. Elife. 2022 Nov 15;11:e80943. doi: 10.7554/eLife.80943. Elife. 2022. PMID: 36377861 Free PMC article.

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